Basic Information
Locus ID:
nbisL1-mrna-17826
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000184F_pilon | 1041031 | 1045607 | + | nbisL1-mrna-17826 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.32 | 96,791.64 Da | 44.37 | 92.64 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 695 | 823 | 3.54508E-52 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 696 | 812 | 5.5E-14 | IPR001650 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 626 | 664 | 3.8E-7 | IPR018957 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 204 | 585 | 7.4E-76 | IPR000330 |
| Pfam | PF08797 | HIRAN domain | 30 | 122 | 1.6E-18 | IPR014905 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 189 | 515 | 3.82E-43 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 618 | 671 | 8.94E-15 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 516 | 867 | 2.81E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 335 | 516 | 2.4E-42 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 525 | 867 | 3.6E-62 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 621 | 677 | 7.3E-14 | IPR013083 |
| Gene3D | G3DSA:3.30.70.2330 | - | 23 | 142 | 1.6E-32 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 179 | 284 | 2.4E-7 | IPR038718 |
| SMART | SM00184 | ring_2 | 626 | 664 | 1.4E-4 | IPR001841 |
| SMART | SM00910 | HIRAN_2 | 29 | 125 | 3.4E-22 | IPR014905 |
| SMART | SM00487 | ultradead3 | 197 | 489 | 1.6E-25 | IPR014001 |
| SMART | SM00490 | helicmild6 | 727 | 812 | 3.3E-15 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 626 | 665 | 12.282736 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 242 | 477 | 13.495598 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 696 | 863 | 15.443515 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 641 | 650 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 321 | - | - |
| Coils | Coil | Coil | 825 | 845 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05130.1 | DNA/RNA helicase protein. | 0 |
| RefSeq | XP_021623249.1 | putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Manihot esculenta] | 0 |
| Q9FF61 | Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana OX=3702 GN=At5g05130 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9V8N7 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Manihot esculenta OX=3983 GN=MANES_09G002900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31387 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4566 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022205 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g063240 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg63716 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23178 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012972 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl02298, Sgl02304, Sgl07446, Sgl07450 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000012316, gene:ENSEOMG00000047017 |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0023210, CQ.Regalona.r1.3AG0023220 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30189710 |
| Apiaceae | Apium graveolens | 2 | Ag10G02231, Ag4G01452 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G016480 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103713263, gene-LOC120107110 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.1907.V1.1, AsparagusV1_07.3185.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G04952 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G05130.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012664m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g37710.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g055500.2N, BniB03g050740.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0876 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0993 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g14450 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0160s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g04990 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2647 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00017579 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G07303, Lb5G28457 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3870, BH03.4156, CH07.359 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0579280, gene-QOZ80_7BG0610510 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0044910.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039282 |
| Poaceae | Oryza coarctata | 2 | Oco13G014090, Oco14G014910 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G369000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304873 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr24G013780, Chr27G016090, Chr28G012950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G294300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG018140, gene_TRIDC2BG021920 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G145200.1, TraesCS2B02G170200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb329060_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-240 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6957 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1344, evm.TU.LG21.986 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g30290 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.199 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10130 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19292 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17826 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.868 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003541 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3138 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11402 |
| Salicaceae | Populus euphratica | 4 | populus_peu10804, populus_peu26297, populus_peu26298 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636037 |
| Solanaceae | Solanum chilense | 1 | SOLCI006432700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005588 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.21099_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G2000 |
| Zosteraceae | Zostera marina | 1 | Zosma03g19720.v3.1 |