Basic Information
Locus ID:
nbisL1-mrna-17811
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 30096797 | 30102591 | - | nbisL1-mrna-17811 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 43,658.36 Da | 41.90 | 78.85 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 231 | 266 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 95 | 131 | 4.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 271 | 305 | 0.001 | IPR001680 |
| Pfam | PF14608 | RNA-binding, Nab2-type zinc finger | 18 | 36 | 0.0093 | - |
| Pfam | PF14608 | RNA-binding, Nab2-type zinc finger | 65 | 84 | 9.6E-4 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 92 | 396 | 2.47E-42 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 61 | 84 | 1.02E-5 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 84 | 166 | 7.2E-10 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 14 | 83 | 1.3E-10 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 179 | 398 | 6.0E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 312 | 353 | 51.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 12 | 37 | 0.019 | IPR000571 |
| SMART | SM00320 | WD40_4 | 269 | 306 | 4.5E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 59 | 85 | 0.0011 | IPR000571 |
| SMART | SM00320 | WD40_4 | 92 | 131 | 8.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 181 | 218 | 7.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 356 | 393 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 229 | 266 | 2.1E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 99 | 140 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 236 | 275 | 10.775796 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 276 | 305 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 236 | 266 | 8.781968 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 59 | 86 | 13.206334 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 12 | 38 | 10.079763 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 99 | 131 | 9.651964 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 293 | 307 | 8.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 118 | 132 | 8.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 253 | 267 | 8.8E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_030474785.1 | - | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8T1R1Z5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology