Basic Information
Locus ID:
nbisL1-mrna-17797
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 11175768 | 11177918 | - | nbisL1-mrna-17797 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 36,312.21 Da | 41.73 | 91.65 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 25 | 159 | 3.4314E-35 | IPR044744 |
| Pfam | PF02225 | PA domain | 58 | 139 | 1.1E-7 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 240 | 281 | 4.6E-9 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 77 | 147 | 1.57E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 240 | 281 | 1.53E-12 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 21 | 150 | 7.8E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 214 | 286 | 6.1E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 241 | 283 | 0.0011 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 241 | 281 | 11.132002 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_015899589.2 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 isoform X2 [Ziziphus jujuba var. spinosa] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P4AS63 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 isoform X2 OS=Ziziphus jujuba OX=326968 GN=LOC107432899 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology