Basic Information
Locus ID:
nbisL1-mrna-17777
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 10658450 | 10659411 | - | nbisL1-mrna-17777 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.23 | 22,151.19 Da | 45.35 | 114.36 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_031264584.1 | U-box domain-containing protein 16 [Pistacia vera] | 0 |
| TrEMBL | A0A1R3JGT8 | RING-type E3 ubiquitin transferase OS=Corchorus olitorius OX=93759 GN=COLO4_16556 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2505 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.551 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4646 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2095 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9639 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17777 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16628, nbisL1-mrna-16629 |