Basic Information
Locus ID:
nbisL1-mrna-17764
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000022F_pilon | 1096319 | 1100839 | - | nbisL1-mrna-17764 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 25,828.80 Da | 47.49 | 79.10 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 56 | 233 | 2.23046E-99 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 57 | 162 | 2.5E-16 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 59 | 189 | 1.83E-22 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 38 | 233 | 4.9E-68 | - |
| SMART | SM00232 | pad1_6 | 58 | 186 | 2.1E-13 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 59 | 187 | 29.604694 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_034909955.1 | AMSH-like ubiquitin thioesterase 2 isoform X1 [Populus alba] | 0 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2JFT6 | Mov34 family protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology