Basic Information
Locus ID:
nbisL1-mrna-17747
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 29428406 | 29430205 | - | nbisL1-mrna-17747 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 45,393.75 Da | 38.76 | 99.08 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 280 | 380 | 2.4E-6 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 71 | 126 | 1.2E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 27 | 133 | 9.78E-20 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 203 | 387 | 2.88E-23 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 185 | 261 | 1.2E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 262 | 389 | 6.3E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 141 | 1.5E-32 | IPR032675 |
| SMART | SM00220 | serkin_6 | 219 | 388 | 1.7E-4 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 225 | 247 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_050237128.1 | receptor-like kinase TMK4 [Mercurialis annua] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0LDD5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for nbisL1-mrna-17747.