Basic Information
Locus ID:
nbisL1-mrna-17713
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 29083301 | 29099505 | - | nbisL1-mrna-17713 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 135,284.98 Da | 51.73 | 72.40 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 729 | 785 | 3.63492E-30 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 730 | 784 | 4.5E-9 | IPR023780 |
| Pfam | PF01426 | BAH domain | 466 | 578 | 7.8E-12 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 794 | 1152 | 1.7E-36 | IPR001525 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 623 | 671 | 2.3E-4 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 620 | 1155 | 1.71E-77 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 723 | 785 | 6.96E-13 | IPR016197 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 948 | 1121 | 4.7E-212 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 398 | 564 | 3.4E-44 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 611 | 702 | 1.3E-14 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 731 | 1172 | 4.7E-212 | - |
| SMART | SM00439 | BAH_4 | 463 | 579 | 5.6E-22 | IPR001025 |
| SMART | SM00298 | chromo_7 | 729 | 788 | 1.1E-9 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 798 | 1151 | 6.0E-32 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 463 | 579 | 18.737696 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 620 | 1162 | 47.664783 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 730 | 783 | 13.263401 | IPR000953 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 753 | 773 | - | IPR023779 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 1137 | 1155 | - | IPR031303 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 800 | 812 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 843 | 857 | 2.1E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 621 | 637 | 2.1E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 889 | 902 | 2.1E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 76 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.1 | chromomethylase 2. | 0 |
| RefSeq | XP_012066500.1 | DNA (cytosine-5)-methyltransferase CMT2 isoform X2 [Jatropha curcas] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A2K2B4M4 | Cytosine-specific methyltransferase OS=Populus trichocarpa OX=3694 GN=POPTR_003G100000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology