Basic Information
Locus ID:
nbisL1-mrna-17707
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Seven in absentia protein family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000184F_pilon | 299451 | 301209 | - | nbisL1-mrna-17707 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 32,309.69 Da | 35.65 | 72.41 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 47 | 85 | 1.96834E-13 | - |
| Pfam | PF03145 | Seven in absentia protein family | 91 | 283 | 3.4E-69 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 35 | 88 | 1.51E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 102 | 287 | 8.5E-40 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 100 | 9.5E-8 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 151 | 1.9E-9 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 159 | 284 | 4.4E-36 | IPR008974 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 49 | 85 | 9.228865 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 102 | 156 | 10.755407 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_012093310.1 | E3 ubiquitin-protein ligase SINAT2 [Jatropha curcas] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K2Z3 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology