Basic Information
Locus ID:
nbisL1-mrna-17703
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
DNA (cytosine-5)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000184F_pilon | 278204 | 285557 | - | nbisL1-mrna-17703 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 63,900.80 Da | 37.97 | 76.57 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 320 | 349 | 5.5E-7 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 361 | 477 | 3.5E-16 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 270 | 533 | 7.2E-45 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 321 | 521 | 2.7E-93 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 220 | 320 | 3.5E-40 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 97 | 219 | 1.2E-26 | IPR043151 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 269 | 574 | 32.385166 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 150 | 313 | 9.205851 | IPR001025 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 455 | 468 | 2.4E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 270 | 286 | 2.4E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 409 | 423 | 2.4E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 93 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_021606189.1 | DNA (cytosine-5)-methyltransferase CMT3 [Manihot esculenta] | 0 |
| Q94F88 | DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana OX=3702 GN=CMT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2C9W5R9 | Cytosine-specific methyltransferase OS=Manihot esculenta OX=3983 GN=MANES_03G089100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology