Basic Information
Locus ID:
nbisL1-mrna-17701
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 28978587 | 28989107 | + | nbisL1-mrna-17701 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 75,602.24 Da | 41.64 | 92.65 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18015 | DEXHc_RecQ1 | 74 | 281 | 2.32192E-128 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 93 | 261 | 5.5E-19 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 71 | 274 | 3.08E-39 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 280 | 469 | 7.62E-24 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 374 | 467 | 1.3E-6 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 282 | 373 | 1.1E-18 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 504 | 559 | 5.9E-7 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 13 | 281 | 7.5E-89 | IPR027417 |
| SMART | SM00487 | ultradead3 | 87 | 290 | 2.4E-30 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 84 | 361 | 2.7E-108 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 299 | 480 | 9.269059 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 99 | 274 | 23.957832 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 626 | 668 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 626 | 662 | - | - |
| Coils | Coil | Coil | 3 | 48 | - | - |
| Coils | Coil | Coil | 570 | 590 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_012075080.1 | - | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5AD95 | ATP-dependent DNA helicase OS=Nyssa sinensis OX=561372 GN=F0562_035560 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology