Basic Information
Locus ID:
nbisL1-mrna-17696
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Src homology 3 domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 28938606 | 28944934 | + | nbisL1-mrna-17696 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 49,823.79 Da | 50.60 | 81.38 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 358 | 406 | 4.7E-10 | IPR001452 |
| SUPERFAMILY | SSF50044 | SH3-domain | 353 | 420 | 7.09E-18 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 82 | 274 | 1.57E-16 | IPR027267 |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 66 | 307 | 2.1E-8 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 338 | 420 | 2.3E-17 | - |
| SMART | SM00326 | SH3_2 | 354 | 409 | 4.1E-16 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 351 | 410 | 22.247204 | IPR001452 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
| Coils | Coil | Coil | 183 | 213 | - | - |
| Coils | Coil | Coil | 227 | 261 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31440.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_021599199.1 | SH3 domain-containing protein 1 [Manihot esculenta] | 0 |
| Q9C865 | SH3 domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=SH3P1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251ITK7 | SH3 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_17G005400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology