HalophFGD

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Basic Information
Locus ID: nbisL1-mrna-17688
Species & Taxonomic ID: Rhizophora mangle & 40031
Genome Assembly: GCA_037832345.1
Description: ABC transporter C family member
Maps and Mapping Data
Chromosome Start End Strand ID
000022F_pilon 627489 637721 - nbisL1-mrna-17688
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.51 197,951.20 Da 38.48 106.09 0.12
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd03244 ABCC_MRP_domain2 1279 1499 6.24682E-123 -
CDD cd18579 ABC_6TM_ABCC_D1 271 558 1.36755E-83 IPR044746
CDD cd03250 ABCC_MRP_domain1 583 812 1.55878E-75 -
CDD cd18580 ABC_6TM_ABCC_D2 910 1256 2.65129E-72 IPR044726
Pfam PF00664 ABC transporter transmembrane region 1114 1208 1.9E-9 IPR011527
Pfam PF00664 ABC transporter transmembrane region 915 1056 8.2E-11 IPR011527
Pfam PF00664 ABC transporter transmembrane region 271 537 1.5E-23 IPR011527
Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 1590 1744 1.1E-66 IPR020829
Pfam PF00005 ABC transporter 1298 1446 4.1E-31 IPR003439
Pfam PF00005 ABC transporter 610 740 3.5E-17 IPR003439
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 610 826 1.13E-42 IPR027417
SUPERFAMILY SSF90123 ABC transporter transmembrane region 265 565 7.32E-33 IPR036640
SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 1523 1592 4.82E-19 IPR036291
SUPERFAMILY SSF90123 ABC transporter transmembrane region 1113 1263 2.75E-22 IPR036640
SUPERFAMILY SSF90123 ABC transporter transmembrane region 912 1062 1.19E-18 IPR036640
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1270 1507 3.29E-67 IPR027417
SUPERFAMILY SSF55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1589 1744 2.81E-68 -
Gene3D G3DSA:3.40.50.720 - 1560 1592 3.2E-8 -
Gene3D G3DSA:3.40.50.720 - 1749 1761 1.3E-81 -
Gene3D G3DSA:1.20.1560.10 ABC transporter type 1, transmembrane domain 250 567 5.2E-48 IPR036640
Gene3D G3DSA:3.30.360.10 Dihydrodipicolinate Reductase; domain 2 1593 1748 1.3E-81 -
Gene3D G3DSA:3.40.50.300 - 571 846 2.4E-61 IPR027417
Gene3D G3DSA:1.20.1560.10 ABC transporter type 1, transmembrane domain 876 1262 2.3E-47 IPR036640
Gene3D G3DSA:3.40.50.720 - 1521 1559 7.3E-10 -
Gene3D G3DSA:3.40.50.300 - 1264 1517 3.3E-80 IPR027417
SMART SM00846 gp_dh_n_7 1522 1602 7.8E-8 IPR020828
SMART SM00382 AAA_5 614 821 2.8E-12 IPR003593
SMART SM00382 AAA_5 1307 1494 8.2E-13 IPR003593
ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile. 912 1244 27.404879 IPR011527
ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile. 274 550 34.023651 IPR011527
ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile. 583 836 18.547546 IPR003439
ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile. 1281 1515 17.987326 IPR003439
ProSitePatterns PS00211 ABC transporters family signature. 713 727 - IPR017871
PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 1603 1619 5.3E-25 IPR020831
PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 1660 1677 5.3E-25 IPR020831
PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 1700 1715 5.3E-25 IPR020831
Gene Ontology
Biological Process:
GO:0055085 (transmembrane transport)
Molecular Function:
GO:0005524 (ATP binding) GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor) GO:0051287 (NAD binding) GO:0140359 (ABC-type transporter activity)
Cellular Component:
GO:0016020 (membrane)
KEGG Pathway
KO Term:
K05665 (ATP-binding cassette, subfamily C (CFTR/MRP), member 1 [EC:7.6.2.3])
Pathway:
ko01523 (Antifolate resistance) map01523 (Antifolate resistance) ko02010 (ABC transporters) map02010 (ABC transporters) ko04071 (Sphingolipid signaling pathway) map04071 (Sphingolipid signaling pathway)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G13080.1 multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. 0
RefSeq XP_034914533.1 putative ABC transporter C family member 15 [Populus alba] 0
Swiss-Prot Q9LK64 ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 0
TrEMBL A0A4V6ABI6 ABC-type xenobiotic transporter OS=Populus alba OX=43335 GN=D5086_0000060630 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 9 jg20168, jg26747, jg34547, jg35463, jg35464, jg35677, jg8650 ...
jg37788, jg9554
Aizoaceae Mesembryanthemum crystallinum 9 gene_11143, gene_1270, gene_13803, gene_13804, gene_13805 ...
gene_26186, gene_26187, gene_3543, gene_6425
Amaranthaceae Atriplex hortensis 9 Ah001083, Ah010622, Ah010623, Ah010624, Ah013833, Ah022649 ...
Ah022662, Ah023370, Ah029154
Amaranthaceae Beta vulgaris 7 BVRB_5g116010, BVRB_5g116040, BVRB_5g116050, BVRB_6g151560 ...
BVRB_7g165990, BVRB_9g220080, BVRB_9g220100
Amaranthaceae Salicornia bigelovii 12 Sbi_jg1105, Sbi_jg11531, Sbi_jg11532, Sbi_jg29048 ...
Sbi_jg3268, Sbi_jg35483, Sbi_jg42732, Sbi_jg45357, Sbi_jg46471, Sbi_jg46472, Sbi_jg46474, Sbi_jg50013
Amaranthaceae Salicornia europaea 6 Seu_jg11220, Seu_jg1675, Seu_jg20780, Seu_jg20784 ...
Seu_jg3600, Seu_jg6662
Amaranthaceae Suaeda aralocaspica 6 GOSA_00000085, GOSA_00002580, GOSA_00005215, GOSA_00006744 ...
GOSA_00022880, GOSA_00023939
Amaranthaceae Suaeda glauca 24 Sgl11523, Sgl16900, Sgl17021, Sgl35092, Sgl40477, Sgl45566 ...
Sgl45567, Sgl50348, Sgl50349, Sgl51256, Sgl55965, Sgl55966, Sgl56394, Sgl56560, Sgl61136, Sgl61137, Sgl65894, Sgl65915, Sgl70193, Sgl74258, Sgl74274, Sgl74339, Sgl77827, Sgl77885
Amaranthaceae Chenopodium album 10 gene:ENSEOMG00000013989, gene:ENSEOMG00000017494 ...
gene:ENSEOMG00000025699, gene:ENSEOMG00000035824, gene:ENSEOMG00000036344, gene:ENSEOMG00000037168, gene:ENSEOMG00000043496, gene:ENSEOMG00000048466, gene:ENSEOMG00000051950, gene:ENSEOMG00000052601
Amaranthaceae Chenopodium quinoa 18 CQ.Regalona.r1.1AG0004340, CQ.Regalona.r1.1AG0007980 ...
CQ.Regalona.r1.2BG0021480, CQ.Regalona.r1.2BG0021490, CQ.Regalona.r1.2BG0027880, CQ.Regalona.r1.5AG0021980, CQ.Regalona.r1.5BG0023400, CQ.Regalona.r1.6AG0006370, CQ.Regalona.r1.6BG0003550, CQ.Regalona.r1.6BG0014320, CQ.Regalona.r1.7BG0010280, CQ.Regalona.r1.7BG0010290, CQ.Regalona.r1.7BG0013630, CQ.Regalona.r1.9AG0011100, CQ.Regalona.r1.9AG0014340, CQ.Regalona.r1.9AG0014350, CQ.Regalona.r1.9BG0011320, CQ.Regalona.r1.9BG0011330
Anacardiaceae Pistacia vera 13 pistato.v30001070, pistato.v30015290, pistato.v30153700 ...
pistato.v30153710, pistato.v30155190, pistato.v30155200, pistato.v30155210, pistato.v30155220, pistato.v30156990, pistato.v30157000, pistato.v30228030, pistato.v30282000, pistato.v30282010
Apiaceae Apium graveolens 13 Ag10G00405, Ag10G00847, Ag11G03740, Ag2G01280, Ag2G01283 ...
Ag2G01284, Ag2G01709, Ag5G02280, Ag6G02781, Ag7G00348, Ag7G02293, Ag9G02858, AgUnG00712
Arecaceae Cocos nucifera 5 COCNU_07G004230, COCNU_07G009110, COCNU_08G003370 ...
scaffold030856G000020, scaffold030856G000040
Arecaceae Phoenix dactylifera 5 gene-LOC103697619, gene-LOC103697840, gene-LOC103703562 ...
gene-LOC103708769, gene-LOC103711867
Asparagaceae Asparagus officinalis 7 AsparagusV1_01.2436.V1.1, AsparagusV1_01.2439.V1.1 ...
AsparagusV1_04.1745.V1.1, AsparagusV1_04.245.V1.1, AsparagusV1_04.511.V1.1, AsparagusV1_10.1874.V1.1, AsparagusV1_10.1875.V1.1
Asteraceae Flaveria trinervia 8 Ftri12G23933, Ftri14G09505, Ftri14G23598, Ftri15G19944 ...
Ftri16G14674, Ftri7G11446, Ftri7G28108, Ftri8G05646
Brassicaceae Arabidopsis thaliana 7 AT1G04120.1, AT1G71330.1, AT3G13080.1, AT3G13090.1 ...
AT3G13100.1, AT3G60160.1, AT3G60970.1
Brassicaceae Eutrema salsugineum 5 Thhalv10001878m.g.v1.0, Thhalv10005742m.g.v1.0 ...
Thhalv10006549m.g.v1.0, Thhalv10019893m.g.v1.0, Thhalv10019894m.g.v1.0
Brassicaceae Schrenkiella parvula 6 Sp1g02940.v2.2, Sp3g11250.v2.2, Sp3g11260.v2.2 ...
Sp3g11270.v2.2, Sp3g33590.v2.2, Sp5g03050.v2.2
Brassicaceae Brassica nigra 9 BniB01g052050.2N, BniB04g024430.2N, BniB05g052710.2N ...
BniB06g046700.2N, BniB06g053730.2N, BniB07g026740.2N, BniB07g026750.2N, BniB07g026770.2N, BniB07g055840.2N
Casuarinaceae Casuarina equisetifolia 6 Ceq01G1445, Ceq01G1446, Ceq05G0984, Ceq06G1252, Ceq07G1281 ...
Ceq07G1282
Casuarinaceae Casuarina glauca 12 Cgl01G1609, Cgl01G1610, Cgl01G1611, Cgl01G1612, Cgl01G1613 ...
Cgl05G0980, Cgl05G1063, Cgl05G1068, Cgl06G0322, Cgl06G1314, Cgl07G1354, Cgl07G1358
Cymodoceaceae Cymodocea nodosa 4 gene.Cymno03g06570, gene.Cymno07g04250, gene.Cymno07g13060 ...
gene.Cymno16g05750
Hydrocharitaceae Thalassia testudinum 4 gene.Thate04g23780, gene.Thate05g13860, gene.Thate05g21650 ...
gene.Thate08g00610
Malvaceae Hibiscus hamabo Siebold & Zucc. 2 nbisL1-mrna-3195, nbisL1-mrna-3904
Nitrariaceae Nitraria sibirica 4 evm.TU.LG03.709, evm.TU.LG04.1372, evm.TU.LG04.9 ...
evm.TU.LG05.1997
Plantaginaceae Plantago ovata 11 Pov_00005378, Pov_00012276, Pov_00012277, Pov_00015178 ...
Pov_00022241, Pov_00029519, Pov_00030964, Pov_00032476, Pov_00032534, Pov_00032536, Pov_00041533
Plumbaginaceae Limonium bicolor 9 Lb1G00953, Lb4G23730, Lb4G23731, Lb4G25782, Lb4G25788 ...
Lb4G25789, Lb5G27455, Lb5G28864, Lb5G28867
Poaceae Echinochloa crus-galli 24 AH01.4115, AH01.5266, AH02.1865, AH02.1868, AH02.477 ...
AH03.287, AH07.1558, AH09.2102, BH01.4418, BH01.4945, BH02.1855, BH02.498, BH03.368, BH09.2267, BH09.845, CH01.4676, CH01.5550, CH02.2087, CH02.2093, CH02.541, CH03.437, CH09.2412, CH09.530, CH09.918
Poaceae Eleusine coracana subsp. coracana 12 gene-QOZ80_1AG0011520, gene-QOZ80_1AG0019120 ...
gene-QOZ80_1BG0060160, gene-QOZ80_1BG0069220, gene-QOZ80_3AG0233330, gene-QOZ80_3BG0294680, gene-QOZ80_4AG0305960, gene-QOZ80_4BG0336930, gene-QOZ80_4BG0351310, gene-QOZ80_6AG0510650, gene-QOZ80_7AG0556360, gene-QOZ80_7BG0587320
Poaceae Hordeum vulgare 7 HORVU.MOREX.r3.2HG0196780.1, HORVU.MOREX.r3.2HG0196800.1 ...
HORVU.MOREX.r3.3HG0241380.1, HORVU.MOREX.r3.3HG0302160.1, HORVU.MOREX.r3.3HG0305140.1, HORVU.MOREX.r3.4HG0396580.1.CDS1, HORVU.MOREX.r3.4HG0412040.1
Poaceae Lolium multiflorum 20 gene-QYE76_014643, gene-QYE76_017221, gene-QYE76_017222 ...
gene-QYE76_045832, gene-QYE76_045833, gene-QYE76_045834, gene-QYE76_050582, gene-QYE76_050585, gene-QYE76_050606, gene-QYE76_050612, gene-QYE76_050614, gene-QYE76_050615, gene-QYE76_050618, gene-QYE76_050620, gene-QYE76_050621, gene-QYE76_050624, gene-QYE76_056333, gene-QYE76_056372, gene-QYE76_057142, gene-QYE76_070864
Poaceae Oryza coarctata 9 Oco01G003010, Oco01G027580, Oco02G028650, Oco04G008330 ...
Oco05G002610, Oco06G002560, Oco07G014400, Oco07G014410, Oco08G013870
Poaceae Oryza sativa 7 LOC_Os01g07870.1, LOC_Os01g67580.1, LOC_Os02g18670.1 ...
LOC_Os02g18700.1, LOC_Os03g04920.1, LOC_Os04g49890.1, LOC_Os04g49900.1
Poaceae Paspalum vaginatum 7 gene-BS78_01G484900, gene-BS78_02G039800 ...
gene-BS78_03G046200, gene-BS78_03G149500, gene-BS78_05G118100, gene-BS78_06G207300, gene-BS78_06G207500
Poaceae Puccinellia tenuiflora 12 Pt_Chr0100120, Pt_Chr0100229, Pt_Chr0200367, Pt_Chr0200368 ...
Pt_Chr0200369, Pt_Chr0205468, Pt_Chr0301571, Pt_Chr0302092, Pt_Chr0504413, Pt_Chr0504475, Pt_Chr0600266, Pt_Chr0600312
Poaceae Sporobolus alterniflorus 16 Chr01G037580, Chr02G019760, Chr03G005210, Chr03G008450 ...
Chr04G004690, Chr05G010770, Chr06G012330, Chr07G006850, Chr08G005680, Chr10G020600, Chr12G001840, Chr15G014160, Chr23G003050, Chr23G014710, Chr26G014230, Chr29G010370
Poaceae Thinopyrum elongatum 10 Tel1E01G500300, Tel2E01G766700, Tel3E01G216200 ...
Tel3E01G499900, Tel3E01G579400, Tel3E01G624000, Tel4E01G402700, Tel4E01G430400, Tel4E01G430500, Tel4E01G563500
Poaceae Triticum dicoccoides 17 gene_TRIDC1AG046120, gene_TRIDC1BG052180 ...
gene_TRIDC2AG064430, gene_TRIDC2AG064450, gene_TRIDC2BG064630, gene_TRIDC2BG068750, gene_TRIDC2BG068770, gene_TRIDC3AG016150, gene_TRIDC3AG052200, gene_TRIDC3AG056080, gene_TRIDC3BG020980, gene_TRIDC3BG058750, gene_TRIDC3BG062740, gene_TRIDC4AG007040, gene_TRIDC4BG044040, gene_TRIDC4BG057910, gene_TRIDC5AG073120
Poaceae Triticum aestivum 26 TraesCS1A02G310100.1, TraesCS1B02G321200.1 ...
TraesCS1D02G309600.1, TraesCS2A02G451300.1, TraesCS2A02G451500.1, TraesCS2B02G442400.1, TraesCS2B02G472800.1, TraesCS2B02G473000.1, TraesCS2D02G420400.1, TraesCS2D02G451100.2, TraesCS2D02G451300.1, TraesCS3A02G129000.1, TraesCS3A02G362500.1, TraesCS3A02G393500.1, TraesCS3B02G148100.2, TraesCS3B02G395000.2, TraesCS3B02G425500.1, TraesCS3D02G129900.2, TraesCS3D02G356300.2, TraesCS3D02G387200.1, TraesCS4A02G051100.1, TraesCS4B02G253200.1, TraesCS4B02G343800.2, TraesCS4D02G253300.3, TraesCS4D02G339000.2, TraesCS5A02G512500.2
Poaceae Zea mays 7 Zm00001eb003490_P001, Zm00001eb072510_P001 ...
Zm00001eb314450_P001, Zm00001eb314470_P001, Zm00001eb336810_P001, Zm00001eb402410_P003, Zm00001eb428300_P001
Poaceae Zoysia japonica 6 nbis-gene-13157, nbis-gene-13158, nbis-gene-2941 ...
nbis-gene-41956, nbis-gene-4536, nbis-gene-6840
Poaceae Zoysia macrostachya 2 Zma_g20326, Zma_g7975
Portulacaceae Portulaca oleracea 13 evm.TU.LG01.528, evm.TU.LG03.1366, evm.TU.LG04.1029 ...
evm.TU.LG04.235, evm.TU.LG07.1754, evm.TU.LG07.1755, evm.TU.LG12.11, evm.TU.LG13.95, evm.TU.LG15.1433, evm.TU.LG18.1182, evm.TU.LG18.727, evm.TU.LG20.697, evm.TU.LG26.301
Posidoniaceae Posidonia oceanica 5 gene.Posoc02g15890, gene.Posoc05g01300, gene.Posoc08g15700 ...
gene.Posoc08g15730, gene.Posoc09g00820
Rhizophoraceae Bruguiera sexangula 4 evm.TU.Scaffold_11_RagTag.21, evm.TU.Scaffold_15_RagTag.836 ...
evm.TU.Scaffold_5_RagTag.1151, evm.TU.Scaffold_7_RagTag.90
Rhizophoraceae Carallia pectinifolia 7 nbisL1-mrna-11625, nbisL1-mrna-19647, nbisL1-mrna-24241 ...
nbisL1-mrna-27025, nbisL1-mrna-27212, nbisL1-mrna-28416, nbisL1-mrna-7124
Rhizophoraceae Ceriops tagal 5 nbisL1-mrna-11343, nbisL1-mrna-11475, nbisL1-mrna-2183 ...
nbisL1-mrna-3998, nbisL1-mrna-6125
Rhizophoraceae Ceriops zippeliana 4 nbisL1-mrna-10246, nbisL1-mrna-14526, nbisL1-mrna-15566 ...
nbisL1-mrna-22320
Rhizophoraceae Kandelia candel 8 add.evm.TU.utg000005l.34, add.evm.TU.utg000028l.23 ...
add.evm.TU.utg000028l.24, add.evm.TU.utg000034l.13, evm.TU.utg000001l.459, evm.TU.utg000005l.362, evm.TU.utg000006l.415, evm.TU.utg000028l.55
Rhizophoraceae Kandelia obovata 6 Maker00002597, Maker00008913, Maker00010037, Maker00010486 ...
Maker00013143, Maker00019079
Rhizophoraceae Rhizophora apiculata 4 nbisL1-mrna-11199, nbisL1-mrna-224, nbisL1-mrna-8014 ...
nbisL1-mrna-9881
Rhizophoraceae Rhizophora mangle 5 nbisL1-mrna-11981, nbisL1-mrna-17688, nbisL1-mrna-19855 ...
nbisL1-mrna-22099, nbisL1-mrna-22612
Salicaceae Populus euphratica 14 populus_peu00799, populus_peu00800, populus_peu00801 ...
populus_peu00810, populus_peu00811, populus_peu05895, populus_peu07650, populus_peu21692, populus_peu26657, populus_peu26717, populus_peu30771, populus_peu35067, populus_peu35080, populus_peu37218
Solanaceae Lycium barbarum 5 gene-LOC132610372, gene-LOC132616633, gene-LOC132619127 ...
gene-LOC132635271, gene-LOC132641229
Solanaceae Solanum chilense 4 SOLCI001954200, SOLCI004087700, SOLCI004205800 ...
SOLCI007444600
Solanaceae Solanum pennellii 3 gene-LOC107020823, gene-LOC107026039, gene-LOC107031366
Tamaricaceae Reaumuria soongarica 5 STRG.200_chr01_+, gene_11105, gene_3245, gene_3367 ...
gene_9165
Tamaricaceae Tamarix chinensis 4 TC01G0537, TC10G0867, TC10G2306, TC11G0402
Zosteraceae Zostera marina 6 Zosma01g09670.v3.1, Zosma04g09370.v3.1, Zosma04g09380.v3.1 ...
Zosma05g11310.v3.1, Zosma05g27300.v3.1, Zosma05g27310.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.