Basic Information
Locus ID:
nbisL1-mrna-17688
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000022F_pilon | 627489 | 637721 | - | nbisL1-mrna-17688 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 197,951.20 Da | 38.48 | 106.09 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1279 | 1499 | 6.24682E-123 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 271 | 558 | 1.36755E-83 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 583 | 812 | 1.55878E-75 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 910 | 1256 | 2.65129E-72 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 1114 | 1208 | 1.9E-9 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 915 | 1056 | 8.2E-11 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 271 | 537 | 1.5E-23 | IPR011527 |
| Pfam | PF02800 | Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain | 1590 | 1744 | 1.1E-66 | IPR020829 |
| Pfam | PF00005 | ABC transporter | 1298 | 1446 | 4.1E-31 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 610 | 740 | 3.5E-17 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 610 | 826 | 1.13E-42 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 265 | 565 | 7.32E-33 | IPR036640 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1523 | 1592 | 4.82E-19 | IPR036291 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 1113 | 1263 | 2.75E-22 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 912 | 1062 | 1.19E-18 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1270 | 1507 | 3.29E-67 | IPR027417 |
| SUPERFAMILY | SSF55347 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 1589 | 1744 | 2.81E-68 | - |
| Gene3D | G3DSA:3.40.50.720 | - | 1560 | 1592 | 3.2E-8 | - |
| Gene3D | G3DSA:3.40.50.720 | - | 1749 | 1761 | 1.3E-81 | - |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 250 | 567 | 5.2E-48 | IPR036640 |
| Gene3D | G3DSA:3.30.360.10 | Dihydrodipicolinate Reductase; domain 2 | 1593 | 1748 | 1.3E-81 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 571 | 846 | 2.4E-61 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 876 | 1262 | 2.3E-47 | IPR036640 |
| Gene3D | G3DSA:3.40.50.720 | - | 1521 | 1559 | 7.3E-10 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 1264 | 1517 | 3.3E-80 | IPR027417 |
| SMART | SM00846 | gp_dh_n_7 | 1522 | 1602 | 7.8E-8 | IPR020828 |
| SMART | SM00382 | AAA_5 | 614 | 821 | 2.8E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1307 | 1494 | 8.2E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 912 | 1244 | 27.404879 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 274 | 550 | 34.023651 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 583 | 836 | 18.547546 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1281 | 1515 | 17.987326 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 713 | 727 | - | IPR017871 |
| PRINTS | PR00078 | Glyceraldehyde-3-phosphate dehydrogenase signature | 1603 | 1619 | 5.3E-25 | IPR020831 |
| PRINTS | PR00078 | Glyceraldehyde-3-phosphate dehydrogenase signature | 1660 | 1677 | 5.3E-25 | IPR020831 |
| PRINTS | PR00078 | Glyceraldehyde-3-phosphate dehydrogenase signature | 1700 | 1715 | 5.3E-25 | IPR020831 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034914533.1 | putative ABC transporter C family member 15 [Populus alba] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4V6ABI6 | ABC-type xenobiotic transporter OS=Populus alba OX=43335 GN=D5086_0000060630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology