Basic Information
Locus ID:
nbisL1-mrna-17663
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000184F_pilon | 78431 | 80914 | + | nbisL1-mrna-17663 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 91,162.42 Da | 39.16 | 104.57 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 523 | 575 | 3.9E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 671 | 714 | 1.5E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 24 | 73 | 2.4E-8 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 209 | 268 | 4.9E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 112 | 172 | 3.6E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 426 | 730 | 2.52E-52 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 61 | 388 | 1.26E-51 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 98 | 321 | 4.3E-61 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 470 | 752 | 1.3E-79 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 398 | 469 | 1.9E-14 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 20 | 95 | 1.6E-7 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 322 | 397 | 1.6E-12 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 135 | 159 | 70.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 677 | 701 | 45.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 231 | 255 | 11.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 279 | 303 | 56.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 515 | 539 | 90.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 110 | 134 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 653 | 676 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 562 | 585 | 17.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 183 | 207 | 19.0 | IPR003591 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 562 | 575 | 2.0E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 162 | 175 | 2.0E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04220.1 | receptor like protein 46. | 0 |
| RefSeq | XP_021652492.1 | leucine-rich repeat receptor protein kinase EMS1-like isoform X1 [Hevea brasiliensis] | 0 |
| F4JGB6 | Receptor-like protein 46 OS=Arabidopsis thaliana OX=3702 GN=RLP46 PE=3 SV=1 | 0 | |
| TrEMBL | A0A836XSV8 | LRR receptor serine/threonine-protein kinase OS=Salix suchowensis OX=1278906 GN=IMY05_016G0001900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |