Basic Information
Locus ID:
nbisL1-mrna-17660
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000022F_pilon | 475429 | 477388 | + | nbisL1-mrna-17660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 41,975.24 Da | 48.72 | 73.33 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 319 | 359 | 1.1E-7 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 40 | 111 | 4.25E-6 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 113 | 237 | 1.57E-13 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 314 | 364 | 7.32E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 97 | 249 | 4.5E-18 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 311 | 363 | 2.9E-10 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 317 | 359 | 10.989079 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 385 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 385 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_021644292.1 | F-box protein At1g67340-like [Hevea brasiliensis] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L254 | MYND-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology