Basic Information
Locus ID:
nbisL1-mrna-17657
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Essential component of the cytosolic iron-sulfur (Fe S) protein assembly machinery. Required for the maturation of extramitochondrial Fe S proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 28591148 | 28595788 | + | nbisL1-mrna-17657 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 38,481.48 Da | 37.44 | 74.50 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 12 | 342 | 1.73539E-67 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 151 | 187 | 2.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 195 | 236 | 1.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 12 | 50 | 3.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 63 | 98 | 0.0038 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 106 | 142 | 7.0E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 341 | 1.6E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 8 | 341 | 1.28E-69 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 57 | 346 | 2.2E-101 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 56 | 4.9E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 194 | 237 | 1.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 149 | 188 | 7.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 59 | 99 | 7.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 104 | 143 | 1.3E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 9 | 51 | 9.0E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 301 | 342 | 5.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 251 | 290 | 0.84 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 111 | 144 | 14.585471 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 111 | 144 | 12.051043 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 205 | 236 | 10.548323 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 309 | 347 | 14.719144 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 16 | 51 | 11.744925 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 16 | 51 | 9.810144 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 156 | 187 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 156 | 187 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 67 | 99 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 67 | 99 | 10.390142 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 205 | 236 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 309 | 347 | 13.47467 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 130 | 144 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 329 | 343 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 130 | 144 | 8.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 38 | 52 | 8.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 329 | 343 | 8.0E-7 | IPR020472 |
| Hamap | MF_03037 | Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. | 8 | 345 | 28.773247 | IPR028608 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26060.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_011006041.1 | PREDICTED: probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog [Populus euphratica] | 0 |
| O80990 | Protein CIA1 OS=Arabidopsis thaliana OX=3702 GN=CIA1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2KH59 | Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11623, jg31955, jg32687 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14478 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2391, Sbi_jg34126 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2382 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012546 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78109, Sgl80615 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016841, gene:ENSEOMG00000039732 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0001770, CQ.Regalona.r1.9BG0020590 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30275530 |
| Apiaceae | Apium graveolens | 5 | Ag10G02042, Ag10G02043, Ag10G02044, Ag10G02045, Ag4G01465 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G016520, scaffold004131G000030 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103718010, gene-LOC103720025, gene-LOC120109818 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.642.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G11511, Ftri15G15672 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G26060.1, AT4G32990.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002028m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g05920.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g024580.2N, BniB07g008040.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0668 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0764 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g00470 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0060s00023.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g11070 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2065 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037624 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G09702, Lb2G09703, Lb5G28991, Lb5G28992 |
| Poaceae | Echinochloa crus-galli | 4 | AH03.724, BH03.857, CH03.2, CH03.954 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0561970, gene-QOZ80_7BG0595540 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0731700.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_042018 |
| Poaceae | Oryza coarctata | 2 | Oco13G004560, Oco14G005360 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g14830.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G112300 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr19G015590, Chr24G004550, Chr24G012880, Chr27G000550 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G751700, Tel7E01G751900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG061960, gene_TRIDC7BG055270 |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G446400.2, TraesCS7A02G446500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb304430_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-51868, nbis-gene-58360 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4981 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.241, evm.TU.LG06.1038, evm.TU.LG11.487 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g22260, gene.Posoc10g01020 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.771 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17657 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13603 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17111 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.14 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012285 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15864 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8986 |
| Salicaceae | Populus euphratica | 2 | populus_peu02424, populus_peu02430 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132600334, gene-LOC132629872, gene-LOC132633644 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI004661900, SOLCI007330400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107030781, gene-LOC107031510 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12315 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0827 |
| Zosteraceae | Zostera marina | 1 | Zosma04g24200.v3.1 |