Basic Information
Locus ID:
nbisL1-mrna-17650
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 28508908 | 28512992 | + | nbisL1-mrna-17650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 42,952.53 Da | 18.08 | 104.50 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 102 | 368 | 1.3E-37 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 86 | 369 | 1.07E-60 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 62 | 174 | 6.4E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 175 | 381 | 8.4E-48 | - |
| SMART | SM00220 | serkin_6 | 99 | 346 | 5.4E-18 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 99 | 378 | 31.73579 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 222 | 234 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 67 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54590.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_002519935.1 | probable receptor-like protein kinase At1g49730 [Ricinus communis] | 0 |
| Q9FIU5 | Calcium/calmodulin-regulated receptor-like kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRLK1 PE=1 SV=1 | 0 | |
| TrEMBL | B9S1S0 | Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis OX=3988 GN=RCOM_0867600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23657 |
| Apiaceae | Apium graveolens | 1 | Ag9G01571 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G24301 |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0049, Ceq01G0050 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0028 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003742 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.765 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17650 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000025l.5 |
| Salicaceae | Populus euphratica | 1 | populus_peu08152 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132638246 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027833 |