Basic Information
Locus ID:
nbisL1-mrna-17646
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 8541340 | 8546110 | - | nbisL1-mrna-17646 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 143,631.84 Da | 32.62 | 109.48 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 1011 | 1280 | 4.21863E-102 | - |
| Pfam | PF00560 | Leucine Rich Repeat | 201 | 222 | 0.47 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 272 | 294 | 0.88 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1008 | 1277 | 8.3E-49 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 15 | 51 | 1.0E-11 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 510 | 569 | 4.2E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 665 | 725 | 6.6E-11 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 345 | 599 | 4.93E-48 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 83 | 425 | 7.85E-63 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 986 | 1277 | 5.4E-79 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 614 | 898 | 1.25E-61 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 16 | 125 | 6.7E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 496 | 607 | 3.5E-29 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 968 | 1080 | 2.0E-39 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 126 | 196 | 4.7E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 197 | 344 | 2.9E-43 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1081 | 1288 | 2.3E-61 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 345 | 495 | 1.8E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 608 | 906 | 8.9E-84 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 532 | 553 | 340.0 | - |
| SMART | SM00369 | LRR_typ_2 | 77 | 101 | 120.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 664 | 696 | 48.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 437 | 460 | 380.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 77 | 103 | 310.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 556 | 582 | 450.0 | - |
| SMART | SM00220 | serkin_6 | 1005 | 1278 | 1.4E-33 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 198 | 222 | 81.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 270 | 291 | 250.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 736 | 765 | 40.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 173 | 200 | 220.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 318 | 341 | 430.0 | - |
| SMART | SM00369 | LRR_typ_2 | 318 | 342 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 389 | 413 | 360.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 125 | 149 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 689 | 711 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 532 | 556 | 25.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 712 | 735 | 82.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 173 | 197 | 38.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 580 | 606 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 810 | 834 | 72.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 736 | 760 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 664 | 688 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 270 | 294 | 14.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 582 | 604 | 7.373124 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1005 | 1280 | 39.763901 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1011 | 1034 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1127 | 1139 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 270 | 283 | 7.6E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 201 | 214 | 7.6E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_011048672.1 | PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Populus euphratica] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | B9ID57 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G141200 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |