halophFGD

Basic Information

Locus ID: nbisL1-mrna-17629

Species & Taxonomic ID: Rhizophora apiculata & 106626

Genome Assembly: GCA_037832385.1

Description: Belongs to the glycosyl hydrolase 18 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	8132418	8133317	+	nbisL1-mrna-17629

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.13	31,883.61 Da	39.02	83.61	-0.06

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd02877	GH18_hevamine_XipI_class_III	27	295	2.42081E-144	-
Pfam	PF00704	Glycosyl hydrolases family 18	29	286	9.7E-29	IPR001223
SUPERFAMILY	SSF51445	(Trans)glycosidases	26	295	1.64E-97	IPR017853
Gene3D	G3DSA:3.20.20.80	Glycosidases	27	298	5.2E-109	-
ProSiteProfiles	PS51910	Glycosyl hydrolases family 18 (GH18) domain profile.	27	299	49.363121	IPR001223
ProSitePatterns	PS01095	Glycosyl hydrolases family 18 (GH18) active site signature.	145	153	-	IPR001579

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process)

Molecular Function:

GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds)

KEGG Pathway

KO Term:

K01183 (chitinase [EC:3.2.1.14])

Pathway:

ko00520 (Amino sugar and nucleotide sugar metabolism) map00520 (Amino sugar and nucleotide sugar metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Reaction:

R01206 (Chitin + H2O <=> N-Acetyl-D-glucosamine + Chitin) R02334 (Chitin + H2O <=> Chitobiose + Chitin)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G24090.1	chitinase A. Chitinase A (class III) expressed exclusively under environmental stress conditions.
RefSeq	XP_021614764.1	hevamine-A [Manihot esculenta]
Swiss-Prot	P23472	Hevamine-A OS=Hevea brasiliensis OX=3981 PE=1 SV=2
TrEMBL	A0A2P1AF89	chitinase (Fragment) OS=Rhizophora apiculata OX=106626 PE=2 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	12	jg10220, jg10221, jg10222, jg10223, jg10224, jg10225, jg1968 ... jg13922, jg20111, jg29407, jg33950, jg9717
Aizoaceae	Mesembryanthemum crystallinum	6	gene_16206, gene_19364, gene_19648, gene_19650, gene_19651 ... gene_3264
Amaranthaceae	Atriplex hortensis	6	Ah000318, Ah000807, Ah018483, Ah018749, Ah018751, Ah018752
Amaranthaceae	Beta vulgaris	9	BVRB_3g051020, BVRB_3g052770, BVRB_3g052780, BVRB_3g052790 ... BVRB_3g052800, BVRB_3g052810, BVRB_3g052830, BVRB_5g114250, BVRB_5g119920
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg12694, Sbi_jg15168, Sbi_jg15170, Sbi_jg56001 ... Sbi_jg56002
Amaranthaceae	Salicornia europaea	5	Seu_jg26475, Seu_jg26477, Seu_jg26479, Seu_jg26480 ... Seu_jg8682
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00017856, GOSA_00019983, GOSA_00019984, GOSA_00019985 ... GOSA_00019986
Amaranthaceae	Suaeda glauca	14	Sgl01206, Sgl01470, Sgl01471, Sgl06290, Sgl06615, Sgl06616 ... Sgl06617, Sgl06618, Sgl06634, Sgl06635, Sgl06636, Sgl06637, Sgl54246, Sgl59592
Amaranthaceae	Chenopodium album	21	gene:ENSEOMG00000002466, gene:ENSEOMG00000002841 ... gene:ENSEOMG00000004061, gene:ENSEOMG00000005519, gene:ENSEOMG00000005639, gene:ENSEOMG00000020822, gene:ENSEOMG00000020829, gene:ENSEOMG00000021745, gene:ENSEOMG00000021833, gene:ENSEOMG00000022689, gene:ENSEOMG00000023134, gene:ENSEOMG00000025558, gene:ENSEOMG00000028774, gene:ENSEOMG00000029447, gene:ENSEOMG00000030796, gene:ENSEOMG00000031251, gene:ENSEOMG00000031407, gene:ENSEOMG00000043735, gene:ENSEOMG00000044403, gene:ENSEOMG00000044952, gene:ENSEOMG00000046032
Amaranthaceae	Chenopodium quinoa	18	CQ.Regalona.r1.3AG0004040, CQ.Regalona.r1.3AG0004050 ... CQ.Regalona.r1.3AG0004090, CQ.Regalona.r1.3AG0004100, CQ.Regalona.r1.3AG0006250, CQ.Regalona.r1.3AG0006260, CQ.Regalona.r1.3AG0010230, CQ.Regalona.r1.3BG0004170, CQ.Regalona.r1.3BG0004190, CQ.Regalona.r1.3BG0006340, CQ.Regalona.r1.5AG0020250, CQ.Regalona.r1.5AG0020280, CQ.Regalona.r1.5AG0025260, CQ.Regalona.r1.5BG0020730, CQ.Regalona.r1.5BG0021620, CQ.Regalona.r1.5BG0021680, CQ.Regalona.r1.5BG0021690, CQ.Regalona.r1.5BG0026810
Anacardiaceae	Pistacia vera	10	pistato.v30005140, pistato.v30005210, pistato.v30005220 ... pistato.v30005250, pistato.v30184580, pistato.v30184610, pistato.v30184620, pistato.v30184640, pistato.v30184660, pistato.v30283950
Apiaceae	Apium graveolens	13	Ag10G01919, Ag1G01341, Ag2G01367, Ag2G02066, Ag2G02067 ... Ag2G02068, Ag2G02069, Ag5G01021, Ag5G01022, Ag5G01025, Ag6G01954, Ag6G01955, Ag9G00453
Arecaceae	Cocos nucifera	9	COCNU_06G003490, COCNU_06G003500, COCNU_07G014910 ... COCNU_07G014920, COCNU_07G015060, COCNU_14G001870, COCNU_14G001880, scaffold002869G000010, scaffold016592G000070
Arecaceae	Phoenix dactylifera	6	gene-LOC103696799, gene-LOC103708364, gene-LOC103708686 ... gene-LOC103713499, gene-LOC103724274, gene-LOC120103931
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.2863.V1.1, AsparagusV1_04.3294.V1.1 ... AsparagusV1_07.2494.V1.1
Asteraceae	Flaveria trinervia	6	Ftri11G10248, Ftri11G23528, Ftri15G07120, Ftri15G33446 ... Ftri17G06586, Ftri18G27560
Brassicaceae	Arabidopsis thaliana	1	AT5G24090.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10004675m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp2g23230.v2.2
Brassicaceae	Brassica nigra	2	BniB02g077030.2N, BniB07g040340.2N
Casuarinaceae	Casuarina equisetifolia	14	Ceq02G1183, Ceq02G1184, Ceq02G1185, Ceq02G1205, Ceq04G0298 ... Ceq05G2243, Ceq09G1527, Ceq09G1530, Ceq09G1531, Ceq09G1532, Ceq09G1533, Ceq09G1534, Ceq09G1535, Ceq09G1537
Casuarinaceae	Casuarina glauca	15	Cgl02G1224, Cgl02G1225, Cgl02G1226, Cgl02G1245, Cgl04G0411 ... Cgl04G0412, Cgl04G0423, Cgl05G2346, Cgl09G1626, Cgl09G1627, Cgl09G1628, Cgl09G1629, Cgl09G1630, Cgl09G1631, Cgl09G1632
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno08g08580
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-1106, nbisL1-mrna-6174
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.2824, evm.TU.LG04.773, evm.TU.LG04.781 ... evm.TU.LG04.783
Plantaginaceae	Plantago ovata	5	Pov_00010602, Pov_00014018, Pov_00014461, Pov_00028175 ... Pov_00039279
Poaceae	Echinochloa crus-galli	24	AH02.2800, AH02.2819, AH02.2829, AH02.3959, AH02.3960 ... AH02.3962, AH03.851, AH03.852, AH09.601, BH02.2702, BH02.2884, BH02.2908, BH02.3974, BH02.3975, BH03.978, BH03.979, CH02.3635, CH02.3650, CH02.3832, CH02.4002, CH02.4003, CH02.4004, CH03.1147, CH03.1148
Poaceae	Eleusine coracana subsp. coracana	20	gene-QOZ80_1AG0027350, gene-QOZ80_1AG0029280 ... gene-QOZ80_1AG0029510, gene-QOZ80_1AG0040680, gene-QOZ80_1AG0040690, gene-QOZ80_1AG0040740, gene-QOZ80_1BG0077530, gene-QOZ80_1BG0079430, gene-QOZ80_1BG0090730, gene-QOZ80_1BG0090740, gene-QOZ80_1BG0090750, gene-QOZ80_3AG0233220, gene-QOZ80_3BG0294730, gene-QOZ80_4AG0322180, gene-QOZ80_4AG0322190, gene-QOZ80_4BG0357980, gene-QOZ80_4BG0357990, gene-QOZ80_7AG0563380, gene-QOZ80_7AG0563390, gene-QOZ80_7BG0593740
Poaceae	Hordeum vulgare	14	HORVU.MOREX.r3.2HG0196890.1.CDS1 ... HORVU.MOREX.r3.2HG0197720.1.CDS1, HORVU.MOREX.r3.3HG0272470.1, HORVU.MOREX.r3.3HG0277190.1.CDS1, HORVU.MOREX.r3.3HG0281350.1, HORVU.MOREX.r3.3HG0300110.1.CDS1, HORVU.MOREX.r3.3HG0300600.1.CDS1, HORVU.MOREX.r3.3HG0300610.1, HORVU.MOREX.r3.3HG0300640.1.CDS1, HORVU.MOREX.r3.3HG0300650.1.CDS1, HORVU.MOREX.r3.3HG0300680.1.CDS1, HORVU.MOREX.r3.3HG0300690.1.CDS1, HORVU.MOREX.r3.3HG0303990.1.CDS1, HORVU.MOREX.r3.7HG0653350.1.CDS1
Poaceae	Lolium multiflorum	22	gene-QYE76_000036, gene-QYE76_000038, gene-QYE76_025639 ... gene-QYE76_025640, gene-QYE76_043258, gene-QYE76_053903, gene-QYE76_054330, gene-QYE76_054334, gene-QYE76_054336, gene-QYE76_054676, gene-QYE76_054693, gene-QYE76_056518, gene-QYE76_056519, gene-QYE76_056520, gene-QYE76_056523, gene-QYE76_056524, gene-QYE76_056526, gene-QYE76_056589, gene-QYE76_056727, gene-QYE76_057679, gene-QYE76_061397, gene-QYE76_061722
Poaceae	Oryza coarctata	14	Oco01G008880, Oco01G016320, Oco01G017610, Oco01G017620 ... Oco01G025500, Oco02G009080, Oco02G017840, Oco02G017980, Oco02G026430, Oco07G002810, Oco07G003100, Oco13G005090, Oco14G006060, Oco14G006400
Poaceae	Oryza sativa	8	LOC_Os01g19750.1, LOC_Os01g47070.1, LOC_Os01g49320.1 ... LOC_Os01g64100.1, LOC_Os01g64110.1, LOC_Os04g27980.1, LOC_Os07g19040.1, LOC_Os07g23850.1
Poaceae	Paspalum vaginatum	10	gene-BS78_01G461100, gene-BS78_01G516000 ... gene-BS78_02G124900, gene-BS78_02G125000, gene-BS78_03G218400, gene-BS78_03G238500, gene-BS78_03G344200, gene-BS78_03G344300, gene-BS78_03G344400, gene-BS78_03G344500
Poaceae	Puccinellia tenuiflora	10	Pt_Chr0107283, Pt_Chr0203152, Pt_Chr0601345, Pt_Chr0601365 ... Pt_Chr0601367, Pt_Chr0601368, Pt_Chr0601392, Pt_Chr0601393, Pt_Chr0601394, Pt_Chr0602432
Poaceae	Sporobolus alterniflorus	13	Chr01G037610, Chr02G003960, Chr02G004020, Chr02G013750 ... Chr03G012130, Chr03G012140, Chr04G004800, Chr05G020020, Chr05G029250, Chr05G029310, Chr07G014930, Chr08G012420, Chr08G014120
Poaceae	Thinopyrum elongatum	20	Tel2E01G765100, Tel2E01G791800, Tel2E01G863200 ... Tel2E01G863300, Tel3E01G407200, Tel3E01G435800, Tel3E01G560700, Tel3E01G560900, Tel3E01G594100, Tel3E01G594200, Tel3E01G594600, Tel3E01G594800, Tel3E01G594900, Tel3E01G595000, Tel3E01G595500, Tel3E01G595600, Tel3E01G599000, Tel7E01G1006100, Tel7E01G218100, Tel7E01G225700
Poaceae	Triticum dicoccoides	18	gene_TRIDC2AG066540, gene_TRIDC2AG066550 ... gene_TRIDC2BG071660, gene_TRIDC3AG035740, gene_TRIDC3AG050380, gene_TRIDC3AG053570, gene_TRIDC3AG053610, gene_TRIDC3AG053930, gene_TRIDC3BG040120, gene_TRIDC3BG044260, gene_TRIDC3BG056630, gene_TRIDC3BG060260, gene_TRIDC3BG060600, gene_TRIDC7AG013250, gene_TRIDC7AG013290, gene_TRIDC7BG001450, gene_TRIDC7BG001490, gene_TRIDC7BG001520
Poaceae	Triticum aestivum	49	TraesCS2A02G469600.1.cds1, TraesCS2A02G469700.1.cds1 ... TraesCS2A02G469800.1.cds1, TraesCS2B02G492500.1.cds1, TraesCS2B02G492600.1.cds1, TraesCS2D02G450600.1.cds1, TraesCS2D02G469700.1.cds1, TraesCS3A02G239200.1.cds1, TraesCS3A02G261700.1, TraesCS3A02G349700.1.cds1, TraesCS3A02G372700.1.cds1, TraesCS3A02G372800.1.cds1, TraesCS3A02G372900.1.cds1, TraesCS3A02G373100.1.cds1, TraesCS3A02G373200.1.cds1, TraesCS3A02G373300.1.cds1, TraesCS3A02G373400.1.cds1, TraesCS3A02G373600.1, TraesCS3A02G373800.1.cds1, TraesCS3A02G376200.1.cds1, TraesCS3B02G267700.1.cds1, TraesCS3B02G294900.1, TraesCS3B02G382300.1.cds1, TraesCS3B02G405100.1.cds1, TraesCS3B02G405200.1.cds1, TraesCS3B02G405400.1.cds1, TraesCS3B02G405500.1.cds1, TraesCS3B02G405600.1.cds1, TraesCS3B02G405700.1.cds1, TraesCS3B02G405900.1, TraesCS3B02G406000.1.cds1, TraesCS3B02G408600.1, TraesCS3D02G239400.1.cds1, TraesCS3D02G261700.1, TraesCS3D02G343700.1.cds1, TraesCS3D02G365700.1.cds1, TraesCS3D02G365800.1.cds1, TraesCS3D02G366000.1.cds1, TraesCS3D02G366100.1.cds1, TraesCS3D02G366400.1, TraesCS3D02G366500.1.cds1, TraesCS3D02G368900.1.cds1, TraesCS5A02G045800.1.cds1, TraesCS7A02G113300.1.cds1, TraesCS7A02G113700.1.cds1, TraesCS7B02G011100.1.cds1, TraesCS7B02G011300.1, TraesCS7B02G011400.1.cds1, TraesCS7D02G108800.1.cds1
Poaceae	Zea mays	9	Zm00001eb147120_P001, Zm00001eb147140_P001 ... Zm00001eb147150_P001, Zm00001eb147160_P001, Zm00001eb157820_P001, Zm00001eb174340_P001, Zm00001eb305260_P001, Zm00001eb305270_P001, Zm00001eb305280_P001
Poaceae	Zoysia japonica	15	nbis-gene-11305, nbis-gene-11307, nbis-gene-25979 ... nbis-gene-26168, nbis-gene-28665, nbis-gene-29021, nbis-gene-31676, nbis-gene-42452, nbis-gene-42453, nbis-gene-4546, nbis-gene-49095, nbis-gene-55283, nbis-gene-55284, nbis-gene-57842, nbis-gene-8002
Poaceae	Zoysia macrostachya	11	Zma_g10802, Zma_g10923, Zma_g11575, Zma_g11591, Zma_g11592 ... Zma_g19483, Zma_g21093, Zma_g4448, Zma_g5027, Zma_g8361, Zma_g9053
Portulacaceae	Portulaca oleracea	10	evm.TU.LG01.1482, evm.TU.LG01.580, evm.TU.LG02.1118 ... evm.TU.LG02.1388, evm.TU.LG02.1498, evm.TU.LG03.932, evm.TU.LG04.187, evm.TU.LG06.1931, evm.TU.LG09.858, evm.TU.LG11.1682
Posidoniaceae	Posidonia oceanica	4	gene.Posoc05g22190, gene.Posoc05g22210, gene.Posoc05g22220 ... gene.Posoc05g22230
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_1_RagTag.492, evm.TU.Scaffold_4_RagTag.565 ... evm.TU.Scaffold_4_RagTag.59, evm.TU.Scaffold_9_RagTag.563
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-10775, nbisL1-mrna-10794, nbisL1-mrna-14589 ... nbisL1-mrna-21679, nbisL1-mrna-28807, nbisL1-mrna-29280, nbisL1-mrna-7674
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-15575, nbisL1-mrna-16015, nbisL1-mrna-20334 ... nbisL1-mrna-3115, nbisL1-mrna-6094, nbisL1-mrna-6973
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-10206, nbisL1-mrna-12488, nbisL1-mrna-1777 ... nbisL1-mrna-2217, nbisL1-mrna-5522
Rhizophoraceae	Kandelia candel	7	add.evm.TU.utg000008l.11, add.evm.TU.utg000008l.133 ... add.evm.TU.utg000010l.22, add.evm.TU.utg000012l.111, add.evm.TU.utg000012l.112, evm.TU.utg000003l.232, evm.TU.utg000006l.444
Rhizophoraceae	Kandelia obovata	3	Maker00000517, Maker00000939, Maker00017761
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-10260, nbisL1-mrna-17071, nbisL1-mrna-1729 ... nbisL1-mrna-17629, nbisL1-mrna-22619
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-19590, nbisL1-mrna-6334, nbisL1-mrna-7226 ... nbisL1-mrna-8554
Salicaceae	Populus euphratica	12	populus_peu27616, populus_peu27617, populus_peu27625 ... populus_peu27626, populus_peu28127, populus_peu28129, populus_peu28130, populus_peu29579, populus_peu29580, populus_peu29581, populus_peu30916, populus_peu31613
Solanaceae	Lycium barbarum	3	gene-LOC132599981, gene-LOC132631685, gene-LOC132642365
Solanaceae	Solanum chilense	5	SOLCI003387300, SOLCI003518100, SOLCI004775200 ... SOLCI004775300, SOLCI006307900
Solanaceae	Solanum pennellii	3	gene-LOC107012248, gene-LOC107020298, gene-LOC114075641
Tamaricaceae	Reaumuria soongarica	5	STRG.10925_chr07_+, gene_10987, gene_4180, gene_8242 ... gene_8243
Tamaricaceae	Tamarix chinensis	5	TC06G2282, TC06G2287, TC08G1489, TC08G2350, TC10G0775