Basic Information
Locus ID:
nbisL1-mrna-1761
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 6818252 | 6823447 | + | nbisL1-mrna-1761 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 97,752.39 Da | 53.98 | 82.09 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 50 | 201 | 5.55619E-48 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 805 | 846 | 6.25743E-25 | - |
| Pfam | PF04564 | U-box domain | 802 | 871 | 3.9E-18 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 521 | 770 | 2.5E-39 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 498 | 771 | 2.05E-68 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 798 | 870 | 1.15E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 589 | 786 | 1.6E-47 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 799 | 871 | 1.5E-29 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 501 | 588 | 1.4E-25 | - |
| SMART | SM00220 | serkin_6 | 516 | 781 | 6.6E-34 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 804 | 867 | 6.8E-32 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 516 | 782 | 34.647392 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 800 | 871 | 39.701267 | IPR003613 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 522 | 543 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 634 | 646 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 318 | - | - |
| Coils | Coil | Coil | 393 | 420 | - | - |
| Coils | Coil | Coil | 449 | 490 | - | - |
| Coils | Coil | Coil | 356 | 376 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_034926351.1 | U-box domain-containing protein 33-like [Populus alba] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2JS06 | U-box domain-containing protein 33 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology