Basic Information
Locus ID:
nbisL1-mrna-17583
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000066F_pilon | 1847419 | 1849809 | - | nbisL1-mrna-17583 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 89,290.31 Da | 40.97 | 82.07 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 44 | 153 | 1.43578E-16 | IPR001480 |
| CDD | cd14066 | STKc_IRAK | 487 | 778 | 6.6196E-94 | - |
| Pfam | PF00069 | Protein kinase domain | 485 | 772 | 7.4E-47 | IPR000719 |
| Pfam | PF00954 | S-locus glycoprotein domain | 222 | 290 | 4.2E-11 | IPR000858 |
| Pfam | PF01453 | D-mannose binding lectin | 83 | 168 | 3.5E-13 | IPR001480 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 463 | 777 | 1.07E-76 | IPR011009 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 70 | 238 | 1.09E-13 | IPR036426 |
| Gene3D | G3DSA:2.90.10.10 | - | 42 | 151 | 1.3E-9 | IPR036426 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 457 | 555 | 1.1E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 557 | 788 | 2.1E-54 | - |
| SMART | SM00220 | serkin_6 | 481 | 776 | 6.3E-26 | IPR000719 |
| SMART | SM00108 | blect_4 | 44 | 153 | 1.2E-5 | IPR001480 |
| PIRSF | PIRSF000641 | SRK | 178 | 796 | 1.6E-168 | IPR024171 |
| PIRSF | PIRSF000641 | SRK | 1 | 196 | 3.7E-28 | IPR024171 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 34 | 157 | 12.824298 | IPR001480 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 254 | 293 | 10.120708 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 481 | 792 | 36.838165 | IPR000719 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 298 | 384 | 7.973732 | IPR003609 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 487 | 509 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 619 | 631 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34300.1 | lectin protein kinase family protein. | 0 |
| RefSeq | XP_002314767.4 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Populus trichocarpa] | 0 |
| Q9XID3 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 OS=Arabidopsis thaliana OX=3702 GN=At1g34300 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2QM98 | Receptor-like serine/threonine-protein kinase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9689 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21983 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah017416, Ah017420 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg40241, Sbi_jg50225, Sbi_jg9751, Sbi_jg9752 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg1825, Seu_jg18930, Seu_jg18931 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011401, GOSA_00011403 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl41583, Sgl41620, Sgl46417, Sgl46466 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000044682 |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.8AG0001070, CQ.Regalona.r1.8AG0001080 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30218860 |
| Apiaceae | Apium graveolens | 1 | Ag8G01886 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G005500 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722865 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1631.V1.1, AsparagusV1_07.2556.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G22868 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0786 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0853 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11122 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.Contig10.16, evm.TU.LG06.1395 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021557 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.3067, CH01.3292 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0118740, gene-QOZ80_2AG0118770 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0339400.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_029879, gene-QYE76_029890 |
| Poaceae | Oryza coarctata | 1 | Oco20G000060 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g01100.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G268700, gene-BS78_05G107500 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502905 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G025370, Chr09G006670, Chr13G018130 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G100400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG039990, gene_TRIDC4BG009190 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G255400.1.cds1, TraesCS4B02G059700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb025540_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-38221, nbis-gene-39372 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13025, Zma_g15792 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.1305, evm.TU.LG18.1369, evm.TU.LG18.1370 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.268 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26511 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5684 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17583 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.76 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21315 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2682 |
| Salicaceae | Populus euphratica | 1 | populus_peu21238 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617218 |
| Solanaceae | Solanum chilense | 1 | SOLCI000977500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014829 |