Basic Information
Locus ID:
nbisL1-mrna-17581
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000066F_pilon | 1819347 | 1821469 | - | nbisL1-mrna-17581 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 33,403.11 Da | 38.86 | 77.28 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 36 | 98 | 1.4E-5 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 25 | 110 | 3.39E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 4 | 112 | 6.4E-10 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 35 | 104 | 1.7E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 34 | 108 | 11.144737 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 277 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_011021746.1 | PREDICTED: uncharacterized protein LOC105123737 [Populus euphratica] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3N7H917 | RRM domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G103600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology