Basic Information
Locus ID:
nbisL1-mrna-1758
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001711F_pilon | 1484350 | 1488707 | - | nbisL1-mrna-1758 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 72,430.83 Da | 58.77 | 83.11 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 216 | 485 | 9.3E-95 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 45 | 143 | 6.43E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 44 | 160 | 3.1E-9 | IPR011333 |
| SMART | SM00225 | BTB_4 | 57 | 162 | 0.0021 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 57 | 126 | 9.537447 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 215 | 509 | 82.635872 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 634 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 620 | 634 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 545 | - | - |
| Coils | Coil | Coil | 548 | 582 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10250.2 | - | 0 |
| RefSeq | XP_021653337.1 | BTB/POZ domain-containing protein DOT3-like [Hevea brasiliensis] | 0 |
| Q9LFU0 | BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana OX=3702 GN=DOT3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KIG2 | Root phototropism protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39509 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16468 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027331 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g135110, BVRB_7g173420 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000003068 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0024260, CQ.Regalona.r1.6BG0025600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30196480 |
| Apiaceae | Apium graveolens | 1 | Ag4G02488 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G32585 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G10250.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015906m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB02g051670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1741 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1802 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.659 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020972 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2447, evm.TU.LG06.688, evm.TU.LG11.129 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1066 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-935 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11482 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2328 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.604 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002295 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6114 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1758 |
| Salicaceae | Populus euphratica | 3 | populus_peu13771, populus_peu13772, populus_peu22928 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640517 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020457 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16296 |