Basic Information
Locus ID:
nbisL1-mrna-17548
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000066F_pilon | 1536623 | 1540857 | - | nbisL1-mrna-17548 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 53,211.67 Da | 34.54 | 92.07 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07983 | X8 domain | 360 | 431 | 1.8E-17 | IPR012946 |
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 23 | 343 | 4.7E-80 | IPR000490 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 23 | 343 | 5.85E-82 | IPR017853 |
| Gene3D | G3DSA:1.20.58.1040 | - | 353 | 446 | 1.1E-9 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 22 | 348 | 2.7E-113 | - |
| SMART | SM00768 | X8_cls | 359 | 444 | 2.0E-48 | IPR012946 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 257 | 270 | - | IPR000490 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01630.1 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_007045239.2 | PREDICTED: glucan endo-1,3-beta-glucosidase 3 [Theobroma cacao] | 0 |
| Q9ZU91 | Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana OX=3702 GN=At2g01630 PE=2 SV=2 | 0 | |
| TrEMBL | A0A061E7Y2 | glucan endo-1,3-beta-D-glucosidase OS=Theobroma cacao OX=3641 GN=TCM_011015 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology