Basic Information
Locus ID:
nbisL1-mrna-17547
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000066F_pilon | 1534377 | 1536163 | + | nbisL1-mrna-17547 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 44,002.53 Da | 57.35 | 87.71 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 94 | 131 | 6.6E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 142 | 239 | 2.02E-8 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 94 | 145 | 7.98E-7 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 93 | 249 | 5.6E-15 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 94 | 134 | 8.941087 | IPR001810 |
| ProSitePatterns | PS00198 | 4Fe-4S ferredoxin-type iron-sulfur binding region signature. | 304 | 315 | - | IPR017900 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01620.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_002527773.1 | F-box protein SKIP28 [Ricinus communis] | 0 |
| Q9ZU90 | F-box protein SKIP28 OS=Arabidopsis thaliana OX=3702 GN=SKIP28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2QKZ6 | F-box domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology