Basic Information
Locus ID:
nbisL1-mrna-17546
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002180F_pilon | 1655204 | 1659898 | + | nbisL1-mrna-17546 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 55,095.62 Da | 38.30 | 83.58 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01593 | Flavin containing amine oxidoreductase | 18 | 481 | 3.2E-81 | IPR002937 |
| SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 18 | 484 | 8.2E-40 | IPR036188 |
| SUPERFAMILY | SSF54373 | FAD-linked reductases, C-terminal domain | 322 | 431 | 5.76E-31 | - |
| Gene3D | G3DSA:1.10.3110.10 | protoporphyrinogen ix oxidase, domain 3 | 103 | 206 | 8.4E-142 | - |
| Gene3D | G3DSA:3.90.660.20 | Protoporphyrinogen oxidase, mitochondrial; domain 2 | 45 | 432 | 8.4E-142 | - |
| Gene3D | G3DSA:3.50.50.60 | - | 18 | 477 | 8.4E-142 | IPR036188 |
| TIGRFAM | TIGR00562 | proto_IX_ox: protoporphyrinogen oxidase | 18 | 485 | 3.1E-71 | IPR004572 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14220.1 | Flavin containing amine oxidoreductase family. Encodes PPO2, a putative protoporphyrinogen oxidase based on sequence homology. Also known as MEE61 (maternal effect embryo arrest 61). mee61 mutant shows arrested endosperm development. | 0 |
| RefSeq | XP_002509548.2 | - | 0 |
| Q8S9J1 | Protoporphyrinogen oxidase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PPOX2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L3W4 | Protoporphyrinogen oxidase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40453 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17450 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19902, Sbi_jg44619 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17335 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl65810, Sgl65842, Sgl70152 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015801, gene:ENSEOMG00000022043 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0008220, CQ.Regalona.r1.2BG0009700 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30024350 |
| Apiaceae | Apium graveolens | 1 | Ag9G00410 |
| Arecaceae | Cocos nucifera | 1 | scaffold003417G000080 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702932 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.847.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G09882 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G14220.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013706m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g29810.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g048440.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0187 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0128 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g02950 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g18390 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.168 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024256 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15062 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1388, BH09.1574, CH09.1692 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0312740, gene-QOZ80_4BG0343880 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0177420.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044869 |
| Poaceae | Oryza coarctata | 2 | Oco07G009280, Oco08G009140 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g41260.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G142700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307183 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr23G010050, Chr25G009610, Chr26G009600, Chr26G009720 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G605000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG050290, gene_TRIDC2BG053550 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G347900.1, TraesCS2B02G366300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb078900_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36941 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19954 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1297, evm.TU.LG25.27 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g15050 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.47 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14845 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17632 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-44 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.31 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007479 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11945 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17546 |
| Salicaceae | Populus euphratica | 1 | populus_peu01209 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616532 |
| Solanaceae | Solanum chilense | 1 | SOLCI004109600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015145 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_275 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1021 |
| Zosteraceae | Zostera marina | 1 | Zosma05g07110.v3.1 |