Basic Information
Locus ID:
nbisL1-mrna-17539
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 3363087 | 3364232 | - | nbisL1-mrna-17539 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 41,995.42 Da | 75.96 | 62.99 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16669 | RING-H2_RNF181 | 193 | 237 | 2.41751E-23 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 264 | 370 | 7.7E-29 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 192 | 234 | 2.0E-10 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 7 | 38 | 5.4E-13 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 173 | 240 | 2.87E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 160 | 240 | 1.9E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 193 | 233 | 2.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 193 | 234 | 12.312242 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 335 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_021626230.1 | probable E3 ubiquitin-protein ligase RHC2A [Manihot esculenta] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9V4B0 | RING-type E3 ubiquitin transferase OS=Manihot esculenta OX=3983 GN=MANES_10G027900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology