Basic Information
Locus ID:
nbisL1-mrna-17477
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 4997448 | 4999423 | - | nbisL1-mrna-17477 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 45,102.77 Da | 41.37 | 96.42 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 316 | 353 | 3.7E-6 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 38 | 300 | 6.8E-25 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 303 | 357 | 2.88E-11 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 38 | 300 | 8.8E-16 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 301 | 368 | 3.9E-10 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 304 | 413 | 15.003572 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 39 | 301 | 14.362084 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58170.1 | SHV3-like 5. | 0 |
| RefSeq | XP_002325146.2 | glycerophosphodiester phosphodiesterase GDPDL6 [Populus trichocarpa] | 0 |
| Q9LVN0 | Glycerophosphodiester phosphodiesterase GDPDL7 OS=Arabidopsis thaliana OX=3702 GN=GDPDL7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U5PKF1 | glycerophosphodiester phosphodiesterase OS=Populus alba OX=43335 GN=D5086_0000214620 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology