Basic Information
Locus ID:
nbisL1-mrna-1744
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000017F_pilon | 5123413 | 5129530 | - | nbisL1-mrna-1744 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.47 | 87,772.04 Da | 50.61 | 77.75 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07839 | Plant calmodulin-binding domain | 676 | 787 | 3.5E-32 | IPR012417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 40 | 106 | 1.97E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 35 | 139 | 9.2E-11 | IPR013083 |
| SMART | SM01054 | CaM_binding_2 | 673 | 787 | 2.6E-25 | IPR012417 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 48 | 103 | 9.907503 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 67 | 76 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 647 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 539 | 586 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 601 | 646 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 551 | 576 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021592763.1 | uncharacterized protein LOC110600263 [Manihot esculenta] | 0 |
| TrEMBL | A0A2P2QPB6 | Uncharacterized protein MANES_06G088100 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology