Basic Information
Locus ID:
nbisL1-mrna-17433
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 26491097 | 26497110 | + | nbisL1-mrna-17433 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 67,902.63 Da | 34.48 | 83.30 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 52 | 332 | 8.98001E-82 | - |
| CDD | cd10316 | RGL4_M | 372 | 469 | 1.60934E-32 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 395 | 466 | 1.8E-24 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 481 | 592 | 1.5E-26 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 42 | 241 | 1.9E-89 | IPR010325 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 408 | 471 | 2.94E-8 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 54 | 332 | 1.79E-12 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 478 | 591 | 4.42E-20 | IPR008979 |
| Gene3D | G3DSA:2.70.98.10 | - | 50 | 352 | 8.7E-18 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 371 | 468 | 5.4E-7 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_021658019.1 | rhamnogalacturonate lyase B-like isoform X1 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A6A6L553 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology