Basic Information
Locus ID:
nbisL1-mrna-17429
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000066F_pilon | 568203 | 573387 | + | nbisL1-mrna-17429 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 39,866.45 Da | 49.17 | 84.68 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14382 | UBA2_RAD23_plant | 328 | 370 | 9.02944E-25 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 5.40573E-31 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 147 | 196 | 8.25916E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 332 | 367 | 8.0E-12 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.3E-18 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 156 | 191 | 1.6E-13 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 274 | 307 | 4.4E-11 | IPR015360 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 274 | 314 | 9.42E-11 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 139 | 197 | 2.04E-11 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 79 | 6.68E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 312 | 374 | 5.11E-15 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 146 | 196 | 2.2E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.1E-27 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 324 | 371 | 3.4E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 230 | 308 | 1.6E-15 | IPR036353 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 5.0E-20 | IPR000626 |
| SMART | SM00165 | uba_6 | 153 | 193 | 1.8E-4 | IPR015940 |
| SMART | SM00165 | uba_6 | 332 | 369 | 1.1E-8 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 261 | 2.3E-67 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.477304 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 329 | 370 | 14.643341 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 151 | 194 | 12.354117 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 278 | 300 | 1.2E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 358 | 373 | 1.2E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 326 | 342 | 1.2E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 343 | 357 | 1.2E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 232 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021637897.1 | ubiquitin receptor RAD23c-like [Hevea brasiliensis] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2MDW7 | Ubiquitin receptor RAD23 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology