Basic Information
Locus ID:
nbisL1-mrna-17423
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002180F_pilon | 1088383 | 1092791 | + | nbisL1-mrna-17423 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 54,483.76 Da | 56.59 | 75.94 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 274 | 317 | 2.18718E-20 | - |
| Pfam | PF13639 | Ring finger domain | 274 | 317 | 2.9E-12 | IPR001841 |
| Pfam | PF00069 | Protein kinase domain | 13 | 112 | 3.0E-9 | IPR000719 |
| SUPERFAMILY | SSF57850 | RING/U-box | 254 | 323 | 1.19E-20 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 4 | 157 | 3.95E-17 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 169 | 5.8E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 250 | 322 | 9.9E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 275 | 316 | 1.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 275 | 317 | 12.356501 | IPR001841 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 156 | 13.842146 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 492 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021671163.1 | RING-H2 finger protein ATL46-like [Hevea brasiliensis] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2J6C9 | Uncharacterized protein MANES_15G181000 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology