Basic Information
Locus ID:
nbisL1-mrna-1742
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
wall-associated receptor kinase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 17270711 | 17273435 | - | nbisL1-mrna-1742 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 73,341.31 Da | 39.90 | 82.29 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 417 | 524 | 1.9E-17 | IPR001245 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 30 | 72 | 8.5E-8 | IPR025287 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 400 | 524 | 2.67E-32 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 387 | 524 | 1.1E-33 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 525 | 623 | 2.3E-8 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 414 | 660 | 14.506444 | IPR000719 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16120.1 | wall associated kinase-like 1. wall-associated kinase like | 0 |
| RefSeq | XP_021658770.1 | wall-associated receptor kinase-like 22 [Hevea brasiliensis] | 0 |
| Q9S9M5 | Wall-associated receptor kinase-like 1 OS=Arabidopsis thaliana OX=3702 GN=WAKL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MW73 | Protein kinase domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg23266, jg23268, jg25055 |
| Amaranthaceae | Atriplex hortensis | 6 | Ah005226, Ah005227, Ah005228, Ah005261, Ah005262, Ah005264 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g075040, BVRB_4g075090 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg17477 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007470, GOSA_00007471 |
| Amaranthaceae | Chenopodium quinoa | 11 | CQ.Regalona.r1.3BG0010860, CQ.Regalona.r1.4AG0003620 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30052150 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G011960 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.187.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri17G04470, Ftri17G05279, Ftri17G13315, Ftri6G21598 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G16090.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G2280 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G2029, Cgl07G1270, Cgl08G0276 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.872 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028280 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28393 |
| Poaceae | Echinochloa crus-galli | 1 | AH04.670 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9AG0692850 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g46850.1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0300641 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2BG009410 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18280 |
| Rhizophoraceae | Bruguiera sexangula | 13 | evm.TU.143.12, evm.TU.143.23, evm.TU.143.26, evm.TU.143.30 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-1742, nbisL1-mrna-1744, nbisL1-mrna-1746 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-73 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.159 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002221 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21646 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24795 |
| Salicaceae | Populus euphratica | 3 | populus_peu04143, populus_peu04145, populus_peu38345 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31588_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3095 |