Basic Information
Locus ID:
nbisL1-mrna-17412
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000066F_pilon | 428113 | 428993 | + | nbisL1-mrna-17412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.41 | 27,989.08 Da | 40.10 | 89.88 | -0.05 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68440.1 | 0 | |
| RefSeq | XP_021614811.2 | uncharacterized protein LOC110616672 [Manihot esculenta] | 0 |
| TrEMBL | A0A2C9VQM5 | WD_REPEATS_REGION domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_06G066900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg34948, jg9149 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4027 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025751 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g141430 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13893, Sbi_jg52043 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9807 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022541 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33182, Sgl38369, Sgl38420 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001687, gene:ENSEOMG00000001790 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0014320, CQ.Regalona.r1.6BG0015060 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30213180 |
| Apiaceae | Apium graveolens | 2 | Ag1G01575, Ag8G02021 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G006060 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.831.V1.1, AsparagusV1_Unassigned.697.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G05080, Ftri11G29823, Ftri5G12426 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G25400.1, AT1G68440.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008406m.g.v1.0, Thhalv10018918m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g22820.v2.2, Sp5g23510.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g032060.2N, BniB03g045750.2N, BniB05g065080.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1547 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019210 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.687, evm.TU.LG21.374 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_15_RagTag.67, evm.TU.Scaffold_17_RagTag.901 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-23623, nbisL1-mrna-26373 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2927, nbisL1-mrna-8307 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17412, nbisL1-mrna-21960 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000001l.23, add.evm.TU.utg000013l.187 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004684 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-21078, nbisL1-mrna-21366 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-23158, nbisL1-mrna-2861 |
| Salicaceae | Populus euphratica | 2 | populus_peu07077, populus_peu21042 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641761 |
| Solanaceae | Solanum chilense | 2 | SOLCI001517200, SOLCI004023400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107017873, gene-LOC107018583 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1290, TC11G1037 |