Basic Information
Locus ID:
nbisL1-mrna-17378
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000066F_pilon | 158612 | 159100 | + | nbisL1-mrna-17378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.39 | 17,860.04 Da | 28.91 | 90.43 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 88 | 150 | 5.13111E-18 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 87 | 149 | 3.9E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 12 | 73 | 3.5E-11 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 4 | 150 | 1.01E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 106 | 158 | 2.5E-15 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 105 | 2.3E-29 | - |
| SMART | SM00054 | efh_1 | 88 | 116 | 5.7E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 124 | 152 | 3.4E-8 | IPR002048 |
| SMART | SM00054 | efh_1 | 13 | 41 | 0.02 | IPR002048 |
| SMART | SM00054 | efh_1 | 49 | 77 | 0.12 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 84 | 119 | 14.569197 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 120 | 155 | 13.788124 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 45 | 80 | 10.859108 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 9 | 44 | 12.560727 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 133 | 145 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 97 | 109 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 58 | 70 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 22 | 34 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_034912524.1 | probable calcium-binding protein CML16 [Populus alba] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7YRV6 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_036181 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology