Basic Information
Locus ID:
nbisL1-mrna-17363
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000066F_pilon | 60563 | 67598 | - | nbisL1-mrna-17363 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 65,072.71 Da | 48.92 | 96.64 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 263 | 554 | 5.21933E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 296 | 7.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 342 | 0.0097 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 517 | 554 | 1.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 474 | 511 | 0.0086 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 256 | 554 | 7.33E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 252 | 519 | 3.3E-52 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 520 | 572 | 4.4E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 470 | 512 | 0.37 | IPR001680 |
| SMART | SM00320 | WD40_4 | 428 | 466 | 24.0 | IPR001680 |
| SMART | SM00667 | Lish | 62 | 94 | 0.0035 | IPR006594 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 0.36 | IPR001680 |
| SMART | SM00320 | WD40_4 | 303 | 342 | 1.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 297 | 3.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 515 | 555 | 4.4E-10 | IPR001680 |
| SMART | SM00668 | ctlh | 95 | 152 | 6.8E-5 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 62 | 94 | 9.251271 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 306 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 310 | 343 | 10.363778 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 522 | 557 | 11.497408 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 265 | 299 | 10.390142 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 522 | 557 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 95 | 152 | 9.902968 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 310 | 351 | 13.582925 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 284 | 298 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021675834.1 | uncharacterized WD repeat-containing protein C343.04c isoform X2 [Hevea brasiliensis] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MN05 | Putative WD repeat-containing protein C343.04c isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology