Basic Information
Locus ID:
nbisL1-mrna-17361
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002180F_pilon | 760977 | 764438 | + | nbisL1-mrna-17361 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 56,017.68 Da | 36.73 | 74.61 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 199 | 243 | 5.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 257 | 292 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 148 | 196 | 0.006 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 145 | 467 | 1.57E-36 | IPR036322 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 74 | 2.29E-11 | IPR036047 |
| Gene3D | G3DSA:2.130.10.10 | - | 315 | 501 | 2.4E-15 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 134 | 311 | 1.8E-23 | IPR015943 |
| Gene3D | G3DSA:1.20.1280.50 | - | 11 | 100 | 1.3E-6 | - |
| SMART | SM00320 | WD40_4 | 198 | 243 | 6.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 339 | 378 | 89.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 425 | 0.039 | IPR001680 |
| SMART | SM00320 | WD40_4 | 145 | 197 | 0.0075 | IPR001680 |
| SMART | SM00320 | WD40_4 | 252 | 292 | 2.3E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 394 | 434 | 9.906923 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 259 | 292 | 8.913786 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 227 | 244 | 9.205141 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 259 | 301 | 11.811761 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 412 | 426 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 184 | 198 | 1.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 279 | 293 | 1.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 230 | 244 | 1.9E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021665385.1 | probable E3 ubiquitin ligase complex SCF subunit sconB isoform X1 [Hevea brasiliensis] | 0 |
| B9WD30 | Nuclear distribution protein PAC1 OS=Candida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841) OX=573826 GN=PAC1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2KCC1 | WD_REPEATS_REGION domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17857 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20200 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032643 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29793, Sbi_jg43303 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18584 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00004333, GOSA_00004335, GOSA_00004336 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66384, Sgl70719 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013571, gene:ENSEOMG00000020749 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2AG0005600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30195110 |
| Apiaceae | Apium graveolens | 1 | Ag9G00507 |
| Arecaceae | Cocos nucifera | 1 | scaffold016592G000050 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721330 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2255.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G01721 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1734 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1786 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g00840 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g14100 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.155, evm.TU.LG02.2388 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02253 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.367, BH02.392, CH02.435 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0012600, gene-QOZ80_1BG0061250 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0237370.1 |
| Poaceae | Oryza coarctata | 2 | Oco01G003670, Oco02G003720 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g09020.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G035600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0200036, Pt_Chr0200042 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr03G006050, Chr08G006490 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G192400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG013750, gene_TRIDC3BG018230 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G111300.1, TraesCS3B02G130100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb121640_P003, Zm00001eb204740_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6754 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10096 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1149, evm.TU.LG25.210 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g10640 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.257 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15097 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-211 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007287 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11811 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17361 |
| Salicaceae | Populus euphratica | 2 | populus_peu24477, populus_peu24484 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623117 |
| Solanaceae | Solanum chilense | 1 | SOLCI000207600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012054 |