Basic Information
Locus ID:
nbisL1-mrna-17357
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000066F_pilon | 14258 | 27272 | + | nbisL1-mrna-17357 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.02 | 88,059.10 Da | 39.78 | 87.79 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 260 | 1.72247E-66 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 52 | 87 | 1.1E-4 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 645 | 803 | 2.6E-51 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 91 | 129 | 6.1E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 175 | 213 | 5.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 135 | 171 | 3.1E-11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 9 | 44 | 0.0068 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 7 | 295 | 5.19E-74 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 132 | 6.6E-34 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 180 | 388 | 2.5E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 133 | 179 | 6.5E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 90 | 129 | 1.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 48 | 87 | 7.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 132 | 171 | 3.8E-13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 213 | 7.0E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 5 | 45 | 9.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 216 | 254 | 3.4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 55 | 92 | 11.681953 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 222 | 16.323217 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 181 | 216 | 12.973764 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 97 | 138 | 14.986489 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 55 | 96 | 15.588017 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 97 | 131 | 11.787407 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 12 | 44 | 8.623787 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 139 | 176 | 14.476484 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 139 | 180 | 18.629074 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 12 | 54 | 10.742378 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 200 | 214 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 158 | 172 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 200 | 214 | 3.5E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 158 | 172 | 3.5E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 116 | 130 | 3.5E-8 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 806 | 20.728697 | IPR026962 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_024462636.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 [Populus trichocarpa] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2M719 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology