Basic Information
Locus ID:
nbisL1-mrna-17308
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
WRKY transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002180F_pilon | 407940 | 411453 | + | nbisL1-mrna-17308 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 58,892.87 Da | 55.20 | 60.94 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 426 | 483 | 1.3E-25 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 241 | 297 | 6.2E-26 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 417 | 485 | 1.31E-29 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 238 | 299 | 1.83E-26 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 410 | 486 | 1.7E-36 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 228 | 300 | 3.0E-28 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 240 | 298 | 1.0E-37 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 425 | 484 | 7.0E-40 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 420 | 485 | 38.113064 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 235 | 299 | 24.650074 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 326 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 326 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G03340.1 | WRKY DNA-binding protein 3. Encodes WRKY DNA-binding protein 3 (WRKY3). | 0 |
| RefSeq | XP_034915453.1 | probable WRKY transcription factor 3 [Populus alba] | 0 |
| Q9ZQ70 | Probable WRKY transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=WRKY3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LKB2 | Putative WRKY transcription factor 3 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology