Basic Information
Locus ID:
nbisL1-mrna-17278
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 24979408 | 24982988 | - | nbisL1-mrna-17278 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.33 | 70,016.85 Da | 62.34 | 73.04 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 597 | 639 | 9.73816E-16 | - |
| Pfam | PF13639 | Ring finger domain | 596 | 639 | 9.6E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 589 | 641 | 1.2E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 573 | 644 | 1.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 598 | 638 | 4.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 598 | 639 | 11.95817 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 243 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G45180.2 | - | 0 |
| RefSeq | XP_035539221.1 | - | 0 |
| O49500 | E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7ZPM4 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_028169 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_6_RagTag.1863, evm.TU.Scaffold_6_RagTag.1864 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17278 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15497 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3230 |