Basic Information
Locus ID:
nbisL1-mrna-17260
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 10904308 | 10905510 | + | nbisL1-mrna-17260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 42,768.31 Da | 61.47 | 64.50 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 352 | 389 | 3.81332E-11 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 349 | 393 | 6.8E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 332 | 396 | 2.17E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 325 | 400 | 5.2E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 352 | 389 | 7.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 352 | 390 | 10.822189 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 245 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07120.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021661635.1 | uncharacterized protein LOC110650825 isoform X1 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A6A6K8M3 | RING-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_026098 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology