Basic Information
Locus ID:
nbisL1-mrna-17199
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Ubiquitin-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 12054421 | 12055185 | + | nbisL1-mrna-17199 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 29,141.47 Da | 47.05 | 103.98 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 89 | 156 | 9.953E-13 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 187 | 245 | 8.08823E-5 | - |
| Pfam | PF00240 | Ubiquitin family | 184 | 244 | 3.7E-5 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 89 | 158 | 8.0E-15 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 10 | 72 | 1.6E-7 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 70 | 159 | 6.68E-16 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 182 | 250 | 7.83E-10 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 73 | 1.8E-10 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 72 | 2.8E-8 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 86 | 158 | 3.3E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 172 | 247 | 1.4E-7 | - |
| SMART | SM00213 | ubq_7 | 1 | 72 | 1.7E-4 | IPR000626 |
| SMART | SM00213 | ubq_7 | 87 | 158 | 6.1E-7 | IPR000626 |
| SMART | SM00213 | ubq_7 | 176 | 247 | 22.0 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 172 | 244 | 11.376856 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 60 | 11.659936 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 87 | 158 | 16.210995 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32350.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_021662420.1 | uncharacterized protein LOC110651399 [Hevea brasiliensis] | 0 |
| P0CG70 | Polyubiquitin OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=ubi PE=3 SV=1 | 0 | |
| TrEMBL | A0A2C9UPW6 | Ubiquitin-like domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_13G072400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37493 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24898 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah007967, Ah022537 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21026, Sbi_jg22763 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16636 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018248 |
| Amaranthaceae | Suaeda glauca | 9 | Sgl01855, Sgl01858, Sgl01860, Sgl07007, Sgl07012, Sgl07014 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011855, gene:ENSEOMG00000030547 ... |
| Apiaceae | Apium graveolens | 1 | Ag11G03314 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G16423 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G32350.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002923m.g.v1.0, Thhalv10017634m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g14720.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g021550.2N |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11138 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.361 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004435 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG18.55 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1354 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20439, nbisL1-mrna-20461 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8799 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21331 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000003l.320 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17199 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4734 |
| Salicaceae | Populus euphratica | 1 | populus_peu24077 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132619510 |
| Solanaceae | Solanum chilense | 1 | SOLCI002204000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024252 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13809 |