Basic Information
Locus ID:
nbisL1-mrna-17179
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the SKP1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002166F_pilon | 478144 | 483869 | - | nbisL1-mrna-17179 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 16,345.18 Da | 38.98 | 79.86 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01466 | Skp1 family, dimerisation domain | 94 | 136 | 4.4E-17 | IPR016072 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 62 | 135 | 4.32E-17 | IPR036296 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 139 | 3.5E-32 | IPR011333 |
| PIRSF | PIRSF028729 | SCF_Skp | 6 | 139 | 5.2E-28 | IPR016897 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G03170.1 | SKP1-like 14. | 0 |
| RefSeq | XP_021592022.1 | SKP1-like protein 14 [Manihot esculenta] | 0 |
| O81057 | SKP1-like protein 14 OS=Arabidopsis thaliana OX=3702 GN=ASK14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2NFK5 | SKP1-like protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 2 | pistato.v30188250, pistato.v30188360 |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1697, Ceq01G2096 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2295 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g03070 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2949 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_18_RagTag.285, evm.TU.Scaffold_5_RagTag.39 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10433 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10441, nbisL1-mrna-9209 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10718, nbisL1-mrna-7776 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000006l.5, add.evm.TU.utg000023l.119 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013746 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20457 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17179, nbisL1-mrna-6866 |
| Salicaceae | Populus euphratica | 2 | populus_peu13958, populus_peu26353 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1128 |