Basic Information
Locus ID:
nbisL1-mrna-17178
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 24027608 | 24030219 | - | nbisL1-mrna-17178 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 44,464.51 Da | 42.26 | 104.85 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00270 | DEAD/DEAH box helicase | 158 | 252 | 4.4E-10 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 306 | 392 | 1.3E-9 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 158 | 392 | 3.2E-27 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 290 | 392 | 5.2E-22 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 152 | 289 | 4.6E-20 | IPR027417 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 292 | 392 | 10.185268 | IPR001650 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_008462340.1 | - | 0 |
| P41377 | Eukaryotic initiation factor 4A-2 OS=Arabidopsis thaliana OX=3702 GN=TIF4A-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S3CH97 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology