Basic Information
Locus ID:
nbisL1-mrna-17165
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
lysM domain receptor-like kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 23857153 | 23859102 | + | nbisL1-mrna-17165 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 70,638.26 Da | 43.45 | 92.10 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01476 | LysM domain | 120 | 165 | 0.14 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 384 | 620 | 7.1E-36 | IPR000719 |
| Pfam | PF01476 | LysM domain | 186 | 230 | 2.8E-5 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 337 | 623 | 1.52E-60 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 422 | 641 | 5.1E-52 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 185 | 232 | 5.1E-7 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 318 | 420 | 4.2E-15 | - |
| SMART | SM00257 | LysM_2 | 185 | 230 | 0.039 | IPR018392 |
| SMART | SM00257 | LysM_2 | 119 | 165 | 0.41 | IPR018392 |
| SMART | SM00220 | serkin_6 | 365 | 623 | 1.8E-13 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 118 | 164 | 8.753714 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 281 | 627 | 30.294121 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 184 | 229 | 11.767154 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 259 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_002533278.1 | lysM domain receptor-like kinase 4 [Ricinus communis] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | B9T4V9 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative OS=Ricinus communis OX=3988 GN=RCOM_0411660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology