Basic Information
Locus ID:
nbisL1-mrna-17149
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 10670510 | 10674421 | + | nbisL1-mrna-17149 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 130,770.28 Da | 32.21 | 110.12 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 34 | 70 | 7.1E-11 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 733 | 792 | 4.6E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 1027 | 1085 | 2.1E-8 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 1087 | 1196 | 1.2E-8 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 219 | 239 | 1.4 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 387 | 443 | 1.8E-6 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 627 | 917 | 1.03E-60 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 87 | 476 | 4.25E-54 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 370 | 623 | 2.38E-55 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1014 | 1201 | 1.35E-31 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 987 | 1088 | 5.5E-30 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 217 | 362 | 1.9E-41 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1089 | 1205 | 1.2E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 628 | 922 | 1.4E-80 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 363 | 627 | 2.7E-77 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 142 | 3.3E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 143 | 216 | 1.7E-19 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 853 | 879 | 52.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 96 | 119 | 560.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 683 | 715 | 73.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 120 | 146 | 18.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 289 | 310 | 490.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 551 | 572 | 140.0 | - |
| SMART | SM00369 | LRR_typ_2 | 731 | 754 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 168 | 191 | 350.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 599 | 622 | 240.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 96 | 119 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 408 | 432 | 400.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 755 | 779 | 20.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 877 | 902 | 23.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 829 | 853 | 55.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 755 | 770 | 85.0 | - |
| SMART | SM00369 | LRR_typ_2 | 120 | 144 | 34.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 551 | 575 | 14.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 779 | 798 | 210.0 | - |
| SMART | SM00369 | LRR_typ_2 | 289 | 313 | 75.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 192 | 216 | 31.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 683 | 707 | 9.4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 337 | 361 | 270.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1024 | 1205 | 11.439366 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1030 | 1053 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 686 | 699 | 7.1E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 755 | 768 | 7.1E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_024438409.1 | leucine-rich repeat receptor protein kinase EMS1 [Populus trichocarpa] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | B9R9E2 | Leucine-rich repeat receptor protein kinase exs, putative OS=Ricinus communis OX=3988 GN=RCOM_1496650 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |