Basic Information
Locus ID:
nbisL1-mrna-17148
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the plant LTP family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 10659252 | 10659575 | - | nbisL1-mrna-17148 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 11,050.65 Da | 31.68 | 90.37 | 0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01960 | nsLTP1 | 18 | 106 | 3.09579E-21 | - |
| SUPERFAMILY | SSF47699 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | 18 | 106 | 3.19E-16 | IPR036312 |
| Gene3D | G3DSA:1.10.110.10 | - | 17 | 107 | 9.0E-20 | IPR036312 |
| PRINTS | PR00382 | Plant phospholipid transfer protein signature | 63 | 78 | 2.5E-11 | IPR000528 |
| PRINTS | PR00382 | Plant phospholipid transfer protein signature | 42 | 56 | 2.5E-11 | IPR000528 |
| PRINTS | PR00382 | Plant phospholipid transfer protein signature | 19 | 35 | 2.5E-11 | IPR000528 |
| PRINTS | PR00382 | Plant phospholipid transfer protein signature | 79 | 96 | 2.5E-11 | IPR000528 |
| PRINTS | PR00382 | Plant phospholipid transfer protein signature | 97 | 107 | 2.5E-11 | IPR000528 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62065.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein. Encodes a Protease inhibitor/seed storage/LTP family protein. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. | 0 |
| RefSeq | XP_002510824.3 | putative non-specific lipid-transfer protein 14 [Ricinus communis] | 0 |
| Q9FIT2 | Putative non-specific lipid-transfer protein 14 OS=Arabidopsis thaliana OX=3702 GN=LTP14 PE=3 SV=2 | 0 | |
| TrEMBL | B9R9E9 | Nonspecific lipid-transfer protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1496730 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10166 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3191 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018940 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15535, Sbi_jg56360 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26800 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00006569, GOSA_00006570 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02032, Sgl07185 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000044425 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0002460, CQ.Regalona.r1.3BG0002600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30182390 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714184 |
| Asteraceae | Flaveria trinervia | 2 | Ftri4G08295, Ftri4G24378 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G62065.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005335m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g25230.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g010380.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2094 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2167 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11813 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003843 |
| Poaceae | Echinochloa crus-galli | 1 | AH03.1049 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_7AG0566140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0412740.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041488 |
| Poaceae | Oryza coarctata | 1 | Oco14G007310 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g27940.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G127300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304083, Pt_Chr0702395 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G570700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4BG058600, gene_TRIDC5AG073660 |
| Poaceae | Triticum aestivum | 3 | TraesCS4B02G348700.1, TraesCS4D02G343100.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45920 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22772 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1354 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12654 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12924 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000010l.150 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17148 |
| Salicaceae | Populus euphratica | 1 | populus_peu30625 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631837 |
| Solanaceae | Solanum chilense | 1 | SOLCI002239300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012324 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_5200, gene_6619 |