Basic Information
Locus ID:
nbisL1-mrna-17146
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
26S proteasome non-ATPase regulatory subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001624F_pilon | 1856288 | 1859229 | + | nbisL1-mrna-17146 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 16,531.03 Da | 48.96 | 104.21 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 67 | 96 | 9.2E-10 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 64 | 95 | 2.35E-8 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 97 | 139 | 1.8E-8 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 59 | 96 | 1.2E-12 | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23540.1 | Mov34/MPN/PAD-1 family protein. | 0 |
| RefSeq | XP_028067606.1 | 26S proteasome non-ATPase regulatory subunit 14 homolog isoform X2 [Camellia sinensis] | 0 |
| Q9LT08 | 26S proteasome non-ATPase regulatory subunit 14 homolog OS=Arabidopsis thaliana OX=3702 GN=RPN11 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3CIP2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17146, nbisL1-mrna-17150 |