Basic Information
Locus ID:
nbisL1-mrna-171
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Ubiquitin domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 1308816 | 1312851 | - | nbisL1-mrna-171 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 58,963.25 Da | 51.50 | 68.85 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14399 | UBA_PLICs | 514 | 552 | 2.62553E-17 | - |
| CDD | cd16106 | Ubl_Dsk2p_like | 30 | 102 | 9.71686E-36 | - |
| Pfam | PF00240 | Ubiquitin family | 32 | 99 | 2.3E-22 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 514 | 550 | 4.3E-9 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 19 | 110 | 6.61E-24 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 510 | 552 | 1.81E-14 | IPR009060 |
| Gene3D | G3DSA:1.10.260.100 | - | 202 | 260 | 2.9E-12 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 496 | 556 | 1.3E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 28 | 115 | 1.1E-22 | - |
| SMART | SM00213 | ubq_7 | 30 | 101 | 2.5E-21 | IPR000626 |
| SMART | SM00165 | uba_6 | 514 | 552 | 3.4E-6 | IPR015940 |
| SMART | SM00727 | CBM | 157 | 203 | 7.2 | IPR006636 |
| SMART | SM00727 | CBM | 415 | 450 | 9.7E-7 | IPR006636 |
| SMART | SM00727 | CBM | 207 | 246 | 5.9E-11 | IPR006636 |
| SMART | SM00727 | CBM | 369 | 411 | 0.29 | IPR006636 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 30 | 99 | 22.329882 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 509 | 553 | 12.137243 | IPR015940 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 56 | 81 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 82 | 103 | 1.3E-7 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 61 | 81 | 1.3E-7 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 40 | 60 | 1.3E-7 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 334 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 327 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17190.1 | ubiquitin family protein. | 0 |
| RefSeq | XP_002521706.1 | ubiquitin domain-containing protein DSK2a [Ricinus communis] | 0 |
| Q9SII9 | Ubiquitin domain-containing protein DSK2a OS=Arabidopsis thaliana OX=3702 GN=DSK2A PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2LGC0 | Plant ubiquilin OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17241, jg30393, jg827 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21537 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009545 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g212540 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg10935, Sbi_jg47408 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21655 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00018765, GOSA_00018766 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55594, Sgl60808 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017866, gene:ENSEOMG00000038091 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0028090, CQ.Regalona.r1.7BG0001860 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30108830, pistato.v30212120 |
| Apiaceae | Apium graveolens | 2 | Ag10G00460, Ag11G04484 |
| Arecaceae | Cocos nucifera | 5 | COCNU_07G014620, COCNU_08G009250, COCNU_09G005280 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103701100, gene-LOC103706874, gene-LOC103716592 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1056.V1.1, AsparagusV1_07.2371.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G18358, Ftri17G18081, Ftri18G21293, Ftri6G03217 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G17190.1, AT2G17200.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022621m.g.v1.0, Thhalv10024813m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g30510.v2.2, Sp7g33070.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g013480.2N, BniB03g064870.2N, BniB04g026440.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G0069, Ceq07G1827 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G0078, Cgl07G1993 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g10280, gene.Cymno03g05490 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0814s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g07340, gene.Thate06g18290 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-3087, nbisL1-mrna-5640, nbisL1-mrna-6938 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2866 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007070 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G21724 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.3048, AH01.5195, BH01.3394, BH01.5014, CH01.3635 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0115290, gene-QOZ80_2BG0169080 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0054790.1, HORVU.MOREX.r3.4HG0409910.2 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_012354, gene-QYE76_071095 |
| Poaceae | Oryza coarctata | 4 | Oco05G001950, Oco06G001900, Oco19G009180, Oco20G009050 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g03920.1, LOC_Os10g39620.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G298700, gene-BS78_01G493000 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0100404, Pt_Chr0100474, Pt_Chr0705396 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr01G038200, Chr04G005290, Chr06G028560, Chr07G006270 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G349500, Tel4E01G536300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG030700, gene_TRIDC1BG036210 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G203000.1, TraesCS1B02G217000.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb002530_P003, Zm00001eb022400_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-3021, nbis-gene-36206, nbis-gene-47035 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g15615, Zma_g2145 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2022, evm.TU.LG23.274 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g11530 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.39, evm.TU.Scaffold_6_RagTag.2182 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-117, nbisL1-mrna-16953, nbisL1-mrna-171 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11429, nbisL1-mrna-20751 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11651, nbisL1-mrna-5846 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1338, evm.TU.utg000019l.1194 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006779, Maker00007058 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15718, nbisL1-mrna-6602 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-2483, nbisL1-mrna-2933 |
| Salicaceae | Populus euphratica | 3 | populus_peu08431, populus_peu14014, populus_peu36920 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132616489, gene-LOC132621272, gene-LOC132623848 |
| Solanaceae | Solanum chilense | 1 | SOLCI004199200 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107010680, gene-LOC107011114, gene-LOC107014744 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.11670_chr02_-, gene_12287 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0250 |
| Zosteraceae | Zostera marina | 2 | Zosma04g21410.v3.1, Zosma06g28650.v3.1 |