Basic Information
Locus ID:
nbisL1-mrna-17094
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000000F_pilon | 1475349 | 1489821 | - | nbisL1-mrna-17094 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 105,241.23 Da | 47.62 | 72.40 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 724 | 780 | 1.01739E-29 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 789 | 903 | 1.8E-18 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 726 | 779 | 5.8E-10 | IPR023780 |
| Pfam | PF01426 | BAH domain | 461 | 573 | 2.4E-13 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 615 | 918 | 5.83E-42 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 718 | 784 | 9.28E-13 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 561 | 925 | 1.4E-151 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 398 | 560 | 6.5E-45 | IPR043151 |
| SMART | SM00298 | chromo_7 | 724 | 783 | 6.5E-10 | IPR000953 |
| SMART | SM00439 | BAH_4 | 459 | 575 | 7.0E-23 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 725 | 778 | 12.774701 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 615 | 925 | 30.864885 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 459 | 575 | 19.635313 | IPR001025 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 795 | 807 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 748 | 768 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 884 | 897 | 1.5E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 838 | 852 | 1.5E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 616 | 632 | 1.5E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 79 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_025013235.1 | DNA (cytosine-5)-methyltransferase CMT2 isoform X3 [Ricinus communis] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A4U5Q016 | Cytosine-specific methyltransferase OS=Populus alba OX=43335 GN=D5086_0000177480 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology