Basic Information
Locus ID:
nbisL1-mrna-17086
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000000F_pilon | 1261594 | 1285594 | - | nbisL1-mrna-17086 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 52,992.13 Da | 39.79 | 90.95 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00270 | DEAD/DEAH box helicase | 129 | 293 | 8.7E-14 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 107 | 229 | 2.54E-23 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 263 | 386 | 1.27E-16 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 86 | 265 | 1.6E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 330 | 400 | 1.1E-8 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 266 | 329 | 8.3E-8 | IPR027417 |
| SMART | SM00487 | ultradead3 | 123 | 325 | 2.9E-8 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 135 | 289 | 12.345005 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 468 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 474 | - | - |
| Coils | Coil | Coil | 16 | 36 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_011028013.1 | PREDICTED: mediator of RNA polymerase II transcription subunit 34 [Populus euphratica] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5AD95 | ATP-dependent DNA helicase OS=Nyssa sinensis OX=561372 GN=F0562_035560 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology